PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020681436.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 581aa MW: 65290 Da PI: 5.6092

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020681436.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.7	1.5e-09	452	500	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+v q+G g+W+ I r + Rt+ ++k++w+++l XP_020681436.1 452 QWTHSEVAKLVDGVSQYGVGRWTEIKRLFFstsSYRTAVDLKDKWRNLL 500 6***************************999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence
MLEIGLAESK DSSLESALGD NCVNSINDVN QTLYNLIPGS RGGIPSASPN EETIEVGHLL 60 VPPHVTRALD EDPMYLSSKS LENCLNVGGT PCSDGYYDQG NDYGILVADA EQVEIQALKY 120 EFMLQEPEEN ENPHITCNLS CDCSDYLLEA VSAETFMDYP SNSEATVRNM EYTSQVQCMD 180 RDVDEVKPDY IARTFAIATL DHSTGAPDST KFLSHDTLHG TFFQNASLEA QKWLKHELLL 240 FDQQNLTELG NVCDQMDSAF LSSENEDDMI LIPGNEIPER VFSSFVSLPH TGALVSSAAK 300 NELPYRDGQA ALDCRGQEIL GTTNDSMMTT KRLRKPTRRY IEESSETKPR SSYDRLKTSL 360 ISSKEKLLHA RAAGKCRWSG AVQLLYQDYP GRVHSLRGFR RKRTKQLEND GKGYNLTPES 420 AKISCFQDSE LQDDPSDEHP TRVHKRRKHH RQWTHSEVAK LVDGVSQYGV GRWTEIKRLF 480 FSTSSYRTAV DLKDKWRNLL RASLADPANK NLVEPQKKHA SAPMPESILQ RVRELSIIHP 540 YPRSQKSTIT DLPILPPPTS LTNTEDALNR SGRILHRLSF S

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence

MLEIGLAESK DSSLESALGD NCVNSINDVN QTLYNLIPGS RGGIPSASPN EETIEVGHLL  60
VPPHVTRALD EDPMYLSSKS LENCLNVGGT PCSDGYYDQG NDYGILVADA EQVEIQALKY  120
EFMLQEPEEN ENPHITCNLS CDCSDYLLEA VSAETFMDYP SNSEATVRNM EYTSQVQCMD  180
RDVDEVKPDY IARTFAIATL DHSTGAPDST KFLSHDTLHG TFFQNASLEA QKWLKHELLL  240
FDQQNLTELG NVCDQMDSAF LSSENEDDMI LIPGNEIPER VFSSFVSLPH TGALVSSAAK  300
NELPYRDGQA ALDCRGQEIL GTTNDSMMTT KRLRKPTRRY IEESSETKPR SSYDRLKTSL  360
ISSKEKLLHA RAAGKCRWSG AVQLLYQDYP GRVHSLRGFR RKRTKQLEND GKGYNLTPES  420
AKISCFQDSE LQDDPSDEHP TRVHKRRKHH RQWTHSEVAK LVDGVSQYGV GRWTEIKRLF  480
FSTSSYRTAV DLKDKWRNLL RASLADPANK NLVEPQKKHA SAPMPESILQ RVRELSIIHP  540
YPRSQKSTIT DLPILPPPTS LTNTEDALNR SGRILHRLSF S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	1e-29	MYB_related family protein