PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020681687.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 238aa MW: 28032.3 Da PI: 6.0601

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020681687.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.1	1.5e-16	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+ll++ vk++G g+W++++r g++R++k+ ++rw +yl XP_020681687.1 17 KGPWTPQEDQLLIEHVKLHGEGRWNSVSRLTGLKRSGKSSRLRWVNYL 64 79********************************************97 PP
2	Myb_DNA-binding	53.1	7.6e-17	70	114	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ XP_020681687.1 70 RGKITPHEETIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114 8999****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MEGQYYGWGT VADGWRKGPW TPQEDQLLIE HVKLHGEGRW NSVSRLTGLK RSGKSSRLRW 60 VNYLRPDLKR GKITPHEETI ILELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKSTK 120 NVDKARARYL RLQQEQKQLL QQQQQQQQQQ LLLLESSTVK EETTLTEEAI MAQEMQEIAF 180 MCSNLPFMYQ EEAGFVGESR TSSEDRSSEE ETCYDTWDNL WNLDDIEISL GEQALSFY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	1e-67	MYB family protein