PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020681736.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CO-like

Protein Properties

Length: 411aa MW: 44797.9 Da PI: 5.8231

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020681736.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.9	3.2e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +++++ +C+++ lC +C + H+ H++ XP_020681736.1 4 LCDFCGDQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHSR 44 7*****************************65677777766 PP
2	zf-B_box	20.9	7.4e-07	46	86	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+++ ++++++ C + + lC++C ++H+ H+ XP_020681736.1 46 LLCERCYSQPATIRCIEESISLCHNCDWNGHSAlasssgHK 86 57*****************************6577777776 PP
3	CCT	65.4	1.6e-22	354	396	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R +a++RYkeK+k RkFeKkirY+sRKa+A++R+RvKGrFvk XP_020681736.1 354 RGNAVMRYKEKKKARKFEKKIRYASRKARADTRKRVKGRFVKV 396 7789*************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MGSLCDFCGD QRSMVYCRSD AASLCLSCDR NVHSANALSR RHSRTLLCER CYSQPATIRC 60 IEESISLCHN CDWNGHSALA SSSGHKKQRI SCYSGCPSAA ELANIWSFVL EFPPITDSRC 120 EQGMGLMSIN ENSASTYWGP LPNSCNADIA DESKINNLEN LNKPNIHIGS STSSPTPMIC 180 SADQEAGSVD STTPKPSNAG MKETGIDKDD FYDDFSVTVD LSFENYEELF GTSHIHSEKL 240 FDDVGIDSFF EMESSAANSN CQGEFTAEVK SLHAGCSNAV SADSVMSTMV AKADSSMSIP 300 ARQAHSSLSV SFSGLTGESS AGDYQECGVT SMLLVGETPW YAPGPESSIQ ATNRGNAVMR 360 YKEKKKARKF EKKIRYASRK ARADTRKRVK GRFVKVGEAY DYDPLCQTRS C

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MGSLCDFCGD QRSMVYCRSD AASLCLSCDR NVHSANALSR RHSRTLLCER CYSQPATIRC  60
IEESISLCHN CDWNGHSALA SSSGHKKQRI SCYSGCPSAA ELANIWSFVL EFPPITDSRC  120
EQGMGLMSIN ENSASTYWGP LPNSCNADIA DESKINNLEN LNKPNIHIGS STSSPTPMIC  180
SADQEAGSVD STTPKPSNAG MKETGIDKDD FYDDFSVTVD LSFENYEELF GTSHIHSEKL  240
FDDVGIDSFF EMESSAANSN CQGEFTAEVK SLHAGCSNAV SADSVMSTMV AKADSSMSIP  300
ARQAHSSLSV SFSGLTGESS AGDYQECGVT SMLLVGETPW YAPGPESSIQ ATNRGNAVMR  360
YKEKKKARKF EKKIRYASRK ARADTRKRVK GRFVKVGEAY DYDPLCQTRS C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-119	CO-like family protein