PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020681804.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 419aa MW: 45777.6 Da PI: 6.2798

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020681804.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.3	2.8e-13	252	297	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YIk+L XP_020681804.1 252 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLADAVSYIKDL 297 899*********************6.....4**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MEELISPSSS SSPTPPPFYS IQPQPLTIPP GNSPEALPTS GLQYILQCLL HSRSEWWTYA 60 IFWRVSPDHT LLSFGDGHFR GKLVSATADG SNDGDDAEWF YAVSLTRSFI IGESTMPSRA 120 YGSLAPVWLT GSHALQTCGC DRSREAEMHG IETLVCIPSS TGVLELGSSD LIGENWVLVQ 180 QAKSLLSTAD EPTAALSQSQ PTPHLSKNGH FTGLSSSVDS EHSDSEGGPM VDRRRPKKRG 240 RKPGSARETT VNHVEAERQR REKLNHRFYA LRSVVPNVSR MDKASLLADA VSYIKDLRAK 300 VEELEAEAKR SKKEVVVDQG NSSGGTPTSG LTGEPATIEL EVKLLGHDAI IRVQSENLVH 360 PPARLMAALR DLELVVHHAT VSGYKEVMMI QDVVVRVPEA LQSDDKLRSA LLVMLQKSE

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MEELISPSSS SSPTPPPFYS IQPQPLTIPP GNSPEALPTS GLQYILQCLL HSRSEWWTYA  60
IFWRVSPDHT LLSFGDGHFR GKLVSATADG SNDGDDAEWF YAVSLTRSFI IGESTMPSRA  120
YGSLAPVWLT GSHALQTCGC DRSREAEMHG IETLVCIPSS TGVLELGSSD LIGENWVLVQ  180
QAKSLLSTAD EPTAALSQSQ PTPHLSKNGH FTGLSSSVDS EHSDSEGGPM VDRRRPKKRG  240
RKPGSARETT VNHVEAERQR REKLNHRFYA LRSVVPNVSR MDKASLLADA VSYIKDLRAK  300
VEELEAEAKR SKKEVVVDQG NSSGGTPTSG LTGEPATIEL EVKLLGHDAI IRVQSENLVH  360
PPARLMAALR DLELVVHHAT VSGYKEVMMI QDVVVRVPEA LQSDDKLRSA LLVMLQKSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	234	242	RRPKKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	5e-65	bHLH family protein