PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020681923.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

SBP

Protein Properties

Length: 977aa MW: 109094 Da PI: 7.8326

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020681923.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.7	1.9e-39	141	217	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+adls++k+yhrrhkvCevh+ka+++++ ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn++rrk+++ XP_020681923.1 141 CQVEGCDADLSQCKDYHRRHKVCEVHAKASSAVIGNIIQRFCQQCSRFHLLQEFDEGKRSCRRRLADHNKKRRKNTS 217 **************************************************************************875 PP

Sequence ? help Back to Top
Protein Sequence Length: 977 aa Download sequence
MGGDIHQIFS TDSSRGQKQK TQEWDLNEWT WDGEGFVAVP VNPRPLDCNK QPCHDVCVSN 60 TSLTGSDECN YRIIGKGLGE ADKRRRILVV EDDKQCDEVG SLTLKLGGQI YPIMEDDLDV 120 GGMKNGKRGL EQASNLNHPK CQVEGCDADL SQCKDYHRRH KVCEVHAKAS SAVIGNIIQR 180 FCQQCSRFHL LQEFDEGKRS CRRRLADHNK KRRKNTSDIS PSGSSAVDNQ STNHLLISLL 240 RIVANLTSDK SQLSKDSELL WNLLRNIASL ASSSDANKSS SLQASHDLQK VGTSARISGQ 300 ATDARLSGVV PLTENLKQSC SPAKTKCAPT MATNSYVSVS AASREMNFQH NTLSPLQHML 360 PGAYNVEGER TKGFDLNATF VDEHDGELGC ERLAKQATLV IGSSGCPPWM VKNCHQLCPP 420 QISGNTESTS TRSPSSSNGD AQSRTDRIVF KLFGKHPNDF PLALRAQIVD WLSHSPTDME 480 SYIRPGCIIL TVYLRLSLSA WDELCHDLGS SLNRLLCLSA DNFWQTGWVY ARLQHHVALI 540 YNGQVVLNKT LVVERTSYCK ILSVTPIAAP PSSRVTFKVK GSNLVRPTTR LFCAFEGRYL 600 IQEMDKHSVN CSNNGSRHEQ FQSLSFSCYL SDAIGRGFIE VEDAGLSSGF FPFIVAEEDI 660 CTEIRMLESS MDVASCDEVL EEKLVAVRNL GLNFLHEMGW LLRRSQLRSR SESENHCSEV 720 FSLPRFRWIL RFSMDRDWSA IVKKLLDFLF DGIIDLEGVS PTKIALSENL LHYAVQRNSK 780 LTVKLLLRYR PCKNSDRAIE NLFRPDMPGP SNITPLHVAA SSIYAESMLD LLTDDPGQFG 840 VKAWKTARDS TGFTPEDYAF ARGHESYLTL MQTKLKKLTE KTDVAVNMPY KPSGKFKSEK 900 LSSLEIDKSK SKSCKLCERP MAYRSSVGSS LLYRPMLLSM VGIAAVCVCV ALIFKGPPEV 960 LFVYPPFRWE LLEYGYM

Sequence ? help Back to Top

Protein Sequence Length: 977 aa Download sequence

MGGDIHQIFS TDSSRGQKQK TQEWDLNEWT WDGEGFVAVP VNPRPLDCNK QPCHDVCVSN  60
TSLTGSDECN YRIIGKGLGE ADKRRRILVV EDDKQCDEVG SLTLKLGGQI YPIMEDDLDV  120
GGMKNGKRGL EQASNLNHPK CQVEGCDADL SQCKDYHRRH KVCEVHAKAS SAVIGNIIQR  180
FCQQCSRFHL LQEFDEGKRS CRRRLADHNK KRRKNTSDIS PSGSSAVDNQ STNHLLISLL  240
RIVANLTSDK SQLSKDSELL WNLLRNIASL ASSSDANKSS SLQASHDLQK VGTSARISGQ  300
ATDARLSGVV PLTENLKQSC SPAKTKCAPT MATNSYVSVS AASREMNFQH NTLSPLQHML  360
PGAYNVEGER TKGFDLNATF VDEHDGELGC ERLAKQATLV IGSSGCPPWM VKNCHQLCPP  420
QISGNTESTS TRSPSSSNGD AQSRTDRIVF KLFGKHPNDF PLALRAQIVD WLSHSPTDME  480
SYIRPGCIIL TVYLRLSLSA WDELCHDLGS SLNRLLCLSA DNFWQTGWVY ARLQHHVALI  540
YNGQVVLNKT LVVERTSYCK ILSVTPIAAP PSSRVTFKVK GSNLVRPTTR LFCAFEGRYL  600
IQEMDKHSVN CSNNGSRHEQ FQSLSFSCYL SDAIGRGFIE VEDAGLSSGF FPFIVAEEDI  660
CTEIRMLESS MDVASCDEVL EEKLVAVRNL GLNFLHEMGW LLRRSQLRSR SESENHCSEV  720
FSLPRFRWIL RFSMDRDWSA IVKKLLDFLF DGIIDLEGVS PTKIALSENL LHYAVQRNSK  780
LTVKLLLRYR PCKNSDRAIE NLFRPDMPGP SNITPLHVAA SSIYAESMLD LLTDDPGQFG  840
VKAWKTARDS TGFTPEDYAF ARGHESYLTL MQTKLKKLTE KTDVAVNMPY KPSGKFKSEK  900
LSSLEIDKSK SKSCKLCERP MAYRSSVGSS LLYRPMLLSM VGIAAVCVCV ALIFKGPPEV  960
LFVYPPFRWE LLEYGYM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	87	KRRRI
2	210	214	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	SBP family protein