PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020682067.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 235aa    MW: 25895.8 Da    PI: 8.945
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020682067.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.12e-221763147
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    krien+  rqv fskRr+g++KKA ELS+LC+ae+ +++fs+ gk +
  XP_020682067.1 17 KRIENEEARQVCFSKRRAGLFKKATELSILCGAEIGIVVFSPAGKPF 63
                    79*****************************************9855 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MVRKKRQSMG RQKIAMKRIE NEEARQVCFS KRRAGLFKKA TELSILCGAE IGIVVFSPAG  60
KPFSFGHPSL DYVTKRFLGG GGGGGGEMVV GPLCGMFVEG QKLLQLNQEH AGLTEKLEEA  120
RRIRAELEAE VAAQRGGSGL PCDVEVHEMG VEELESFQKR LEELRRNVAN RREELEILCM  180
DTKVARGGVP PRLGYGGGYL GGYNGLYLTP VPVGGFYGQG QDMNMGFRFG DRWYS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-30M-type_MADS family protein