PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020682070.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family LBD
Protein Properties Length: 164aa    MW: 18357 Da    PI: 7.4244
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020682070.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601407.6e-4461051100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrr+C+kdC+++p fp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la
  XP_020682070.1   6 PCASCKLLRRRCTKDCIFSPFFPSDDPQKFAIVHKVFGASNVSKMLQELPIHQRADAVSSLVYEANARMRDPVYGCVGAISYLQNQVSQLQMQLA 100
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_020682070.1 101 VAQAE 105
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MGGNSPCASC KLLRRRCTKD CIFSPFFPSD DPQKFAIVHK VFGASNVSKM LQELPIHQRA  60
DAVSSLVYEA NARMRDPVYG CVGAISYLQN QVSQLQMQLA VAQAEILCIQ MQQDQPLTHE  120
NHQQQNMISP HIDNSLLNPI PQLMNFASTS NVGQDPLKRE SLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-75LBD family protein