PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020682129.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

YABBY

Protein Properties

Length: 177aa MW: 19550.1 Da PI: 8.0856

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020682129.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	79	1.5e-24	5	62	5	62
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaesh 62 +++vCyv+CnfCntil+vsvP + l+ +vtvrCGhC +llsvn+ + q ++ ++ XP_020682129.1 5 AVPDHVCYVHCNFCNTILVVSVPGSNLSATVTVRCGHCGNLLSVNMGVPPQSMPFQDL 62 579*******************************************998888887774 PP
2	YABBY	122.2	7.6e-38	92	151	110	170
YABBY 110 prvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +pp i+P ekrqrvPsaynrfikeei+r+ka+nPdishreafsaaaknWahfP+ihfgl XP_020682129.1 92 LDMPP-IHPQEKRQRVPSAYNRFIKEEIRRLKATNPDISHREAFSAAAKNWAHFPNIHFGL 151 33455.99***************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence
MSAPAVPDHV CYVHCNFCNT ILVVSVPGSN LSATVTVRCG HCGNLLSVNM GVPPQSMPFQ 60 DLQGAQLLRW NCESSSNCNR ISLFNAVGSN QLDMPPIHPQ EKRQRVPSAY NRFIKEEIRR 120 LKATNPDISH REAFSAAAKN WAHFPNIHFG LNHDGNSQVK IDDAIPAHGV QNSQGYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	5e-62	YABBY family protein