PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020682168.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ERF
Protein Properties Length: 239aa    MW: 26222.6 Da    PI: 9.4272
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020682168.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-1883133256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr++  +g+WvAeIr p++   r r++lg++++ae Aa a+++a+ kl+ge
  XP_020682168.1  83 LYRGVRQRQ-WGKWVAEIRLPRN---RMRIWLGTYDSAEAAACAYDRAAYKLRGE 133
                     59****999.**********965...59*************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MNLPIAETLA PFTSPENIPS TLSQIILSGS NPLDSVFAHI SPQAPPPPAA SPPHTPIGSS  60
IYLQLADLLR SASPHSSAAR KKLYRGVRQR QWGKWVAEIR LPRNRMRIWL GTYDSAEAAA  120
CAYDRAAYKL RGEYARLNFP AMRDADSQCS DKLREVRSAV DSKIQAISQR IVKQKRLKRE  180
KADAKGKQPE TSSSSSSSSV SGERVTGDGA CGEENDGGEC WLSRMPSFDP EIIWEVLAN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.16e-36ERF family protein