PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020682274.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 382aa MW: 41065.5 Da PI: 6.2636

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020682274.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.4	5.2e-08	209	256	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + sk a +L + +++++ Lq XP_020682274.1 209 SHSLAERARREKINARMKLLQELVPGC----SKISGTALVLDEIINHVQLLQ 256 8*************************9....566667777777777777666 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MEPARCSGAG SGNSGTYATE ITETLRLEEI ESLMDVNVIH QGFEGSSPEN AGGSSFTALL 60 GLHPIQAVEL LHELDPSSSG GFRLGDPKAI HFPLSCSPTF PSNAALIERA TRFSVFAAAE 120 ESPEGSSAFP SNSDGDHSTN PKSDPPDSDL KPQRLSKRKE TDKSSKAKTP SKKGKSTAGD 180 DGEGSPANPD GEKLPYVHVR ARRGQATDSH SLAERARREK INARMKLLQE LVPGCSKISG 240 TALVLDEIIN HVQLLQRQVE ILSMRLAAVN PRIDFTGLDN LLSAECGRVT ASGHGPGWVD 300 GSCNGVIRRS HHYDNQQQIW HVDLQQQETA GWERDETQQL LHHHHHVFIS GSSSGSPPGT 360 SLFGYDSAAS ALPLSTQLKS EM

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MEPARCSGAG SGNSGTYATE ITETLRLEEI ESLMDVNVIH QGFEGSSPEN AGGSSFTALL  60
GLHPIQAVEL LHELDPSSSG GFRLGDPKAI HFPLSCSPTF PSNAALIERA TRFSVFAAAE  120
ESPEGSSAFP SNSDGDHSTN PKSDPPDSDL KPQRLSKRKE TDKSSKAKTP SKKGKSTAGD  180
DGEGSPANPD GEKLPYVHVR ARRGQATDSH SLAERARREK INARMKLLQE LVPGCSKISG  240
TALVLDEIIN HVQLLQRQVE ILSMRLAAVN PRIDFTGLDN LLSAECGRVT ASGHGPGWVD  300
GSCNGVIRRS HHYDNQQQIW HVDLQQQETA GWERDETQQL LHHHHHVFIS GSSSGSPPGT  360
SLFGYDSAAS ALPLSTQLKS EM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-66	bHLH family protein