PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020682397.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 680aa MW: 78341.2 Da PI: 8.0219

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020682397.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.2	1.8e-20	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak +GFs+r+++++ + + it+r fvC + g++ ++ ++++k +r+r+++r+gC+a +++++ + ++w+vt + +HnHel XP_020682397.1 62 DFYSQFAKGCGFSIRRHRTEGKdGVGKGITRRYFVCHRAGNTPTKVSSETKPQRNRKSSRCGCQAYMRISRCTemgLSEWRVTGFAIHHNHELL 155 6************99988774566779**************99*****************998766789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence
MTEESDTILD VYDEQSEQRS FSLDDSSSSE ESPKHTRLSL ETVNDAIPYI GQRFATHDAA 60 YDFYSQFAKG CGFSIRRHRT EGKDGVGKGI TRRYFVCHRA GNTPTKVSSE TKPQRNRKSS 120 RCGCQAYMRI SRCTEMGLSE WRVTGFAIHH NHELLEPNQV RFLPAYRSIS DADKNRILMF 180 TKTGISVQQM MRLMELEKCV EPGYLPFTEK DVRNLIQSFR RVEQDDENID LLRMCRNLKE 240 KDPNFRYEFT TAMNGRLENI AWSYASAVQS YEIFGDAVVF DTTHRLNAFD MPLGIWVGMN 300 NYGMPCFFGC VLLREDNIGA FSWALKVFLK FMNGKAPQTI LTDQNLCLKE AIANEMPTTK 360 HALCIWFIVA KFPSWFNAVL GERYNDWKAE FYRLYSLGTT EEFEHGWRAM IDRFGLHSNR 420 HITNLFTSRT LWALPFLRSH FFAGMTTSGL SKAINAFIQR FLNAQTRLAH FVEQAAVAVD 480 FRDQAAEQQT MQQNLQNICL KTGAPMEAHA AAILTPYAFC KLQDEFVMAA HYASFQVEES 540 YFLVRHHTKM DGGRKVDWDS REEFVSCSCR MFEFSGILCR HALRVLSTIN CFQIPDRHLP 600 LRWRRMNSLP SKHSTDEALV EQNERFQALQ SMLSTLVSEA TKSKERLDIA FEEISQLLTR 660 IRGVQPSGLG SRNGVHRIAR

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence

MTEESDTILD VYDEQSEQRS FSLDDSSSSE ESPKHTRLSL ETVNDAIPYI GQRFATHDAA  60
YDFYSQFAKG CGFSIRRHRT EGKDGVGKGI TRRYFVCHRA GNTPTKVSSE TKPQRNRKSS  120
RCGCQAYMRI SRCTEMGLSE WRVTGFAIHH NHELLEPNQV RFLPAYRSIS DADKNRILMF  180
TKTGISVQQM MRLMELEKCV EPGYLPFTEK DVRNLIQSFR RVEQDDENID LLRMCRNLKE  240
KDPNFRYEFT TAMNGRLENI AWSYASAVQS YEIFGDAVVF DTTHRLNAFD MPLGIWVGMN  300
NYGMPCFFGC VLLREDNIGA FSWALKVFLK FMNGKAPQTI LTDQNLCLKE AIANEMPTTK  360
HALCIWFIVA KFPSWFNAVL GERYNDWKAE FYRLYSLGTT EEFEHGWRAM IDRFGLHSNR  420
HITNLFTSRT LWALPFLRSH FFAGMTTSGL SKAINAFIQR FLNAQTRLAH FVEQAAVAVD  480
FRDQAAEQQT MQQNLQNICL KTGAPMEAHA AAILTPYAFC KLQDEFVMAA HYASFQVEES  540
YFLVRHHTKM DGGRKVDWDS REEFVSCSCR MFEFSGILCR HALRVLSTIN CFQIPDRHLP  600
LRWRRMNSLP SKHSTDEALV EQNERFQALQ SMLSTLVSEA TKSKERLDIA FEEISQLLTR  660
IRGVQPSGLG SRNGVHRIAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein