PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020682445.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ERF
Protein Properties Length: 255aa    MW: 28810.6 Da    PI: 6.5379
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020682445.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-19105154255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+W+AeIrdp   ++r+r++lg+f+taeeAa+ ++ a+  ++g
  XP_020682445.1 105 RFRGVRRRP-WGKWAAEIRDP---NRRRRIWLGTFDTAEEAAAVYDSAAVMIKG 154
                     79*******.**********8...335*********************987776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MEISRPSHRL DFSGLPVKYS EYFSTIKKKT MVAGKPKRID RRVVRIFFTD ADATDSSSSD  60
EEVVNPAPRR VKRQVYEIGF QVGSVSPRAN TTTGAASPET NYSKRFRGVR RRPWGKWAAE  120
IRDPNRRRRI WLGTFDTAEE AAAVYDSAAV MIKGERAVTN FPLWKVPSPA LIDCEAEPEK  180
IVHEPSCPFS SPTSVLPCAV EQTPFDSFCY GDVDVFGVSV GPPLYLTEFC MPKRQYWEVD  240
LDDFSAEDFS MEIVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110129RRRPWGKWAAEIRDPNRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-28ERF family protein