PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020682616.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C3H
Protein Properties Length: 177aa    MW: 19780.5 Da    PI: 8.1587
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020682616.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.4e-06114135527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C+ ++  G+C+ G+ C+F H++
  XP_020682616.1 114 ECHMYMM-GFCPNGPGCRFKHSK 135
                     7999999.*************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MDDSSGAFSF DFETALDAGG EGGGEPSAVL GQGLHGDPRA LAVPEIAVAP LDRRNFRRTV  60
CRHWLRGLCM KGASCGFLHQ YDKEKMPVCR FFRNFGECRE KDCLYKHTIE EIKECHMYMM  120
GFCPNGPGCR FKHSKLPGPP PPVEEVLKKI QQLSSLSSYG SSNRQFHPRN ASFNSFS