PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020682680.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family LBD
Protein Properties Length: 148aa    MW: 17060.5 Da    PI: 8.5095
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020682680.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.35.1e-3891091101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C++dC+lapyf  ++p++fa+vhk+FGasn+ ++l++lp ++r +a++++++eA +r++dPvyG+ ++i +lq++++++++el+
  XP_020682680.1   9 RCAACKYLRRRCSEDCILAPYFHPSNPHRFACVHKIFGASNIARMLQHLPVHKRAQAADAMAWEAYWRVQDPVYGSNAIIAHLQHEISKAQNELQ 103
                     6********************************************************************************************** PP

          DUF260  96 llkeel 101
                     ++++++
  XP_020682680.1 104 MTRAQI 109
                     999875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    
MSSINGGRRC AACKYLRRRC SEDCILAPYF HPSNPHRFAC VHKIFGASNI ARMLQHLPVH  60
KRAQAADAMA WEAYWRVQDP VYGSNAIIAH LQHEISKAQN ELQMTRAQIA IIQNFQHQQH  120
NQIQPNQQLQ AFWALEDEPF VLPDLPHL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.15e-41LBD family protein