PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020682689.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Protein Properties

Length: 860aa MW: 95467.7 Da PI: 8.6181

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020682689.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.1	3.9e-19	360	459	1	98
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k l+ sd+++ grlvlpkk+ae++ + ++e+ l+++d sg++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e XP_020682689.1 360 FEKMLSASDAGRIGRLVLPKKCAEAYfpliS--QPEGLPLKMQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PE 450 89************************654..445667***********99899999999.*******************987.77 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++lv+++++ XP_020682689.1 451 GKLVMGFRK 459 777777665 PP

Sequence ? help Back to Top
Protein Sequence Length: 860 aa Download sequence
MSSSSAMATS GRKICFNTQC KKVITEQTRR KGWKLRSGDY SELCERCFSS FDHGNFCETF 60 HSNAAGWRKC ESCGKRIHCG CIVSIPVYML LDVGGVECMA CVRNSFSAVS NQISSPPVAL 120 STKLPERSKA FPVKSWNQVS GSFPGQWRHP TNIWNSSSIQ SDLHQRLSYE FDRPNAERLM 180 AGARSSFSSQ EKKSEDIHEK IASSGPNHVA QDMNGENNLI TMRKVMASDP STSCFSGIKF 240 EAHQISHGSS SVNSKGDSRS LLMGLSAPFS PINGTNDPSQ VSTTQPQRQV ASSTLSKQCY 300 PNSLSSIDST SESPAHMRNG KGRFDPGARS HLLPRYWPRI TDQELQQISG DSNSAITPLF 360 EKMLSASDAG RIGRLVLPKK CAEAYFPLIS QPEGLPLKMQ DASGKEWVFQ FRFWPNNNSR 420 MYVLEGVTPC IQSMQLQAGD TVTFSRIDPE GKLVMGFRKA ANVSNNEQDI QSAKDGNGGS 480 TPSDVKPNTV DYIAIPPLLP HKGNKESRNQ TNAADKASWS KNDKSEFILK DVCAPKFDIA 540 LCRRKGSFLI SKSKRLRIES AESIELKLTW EEAQVLLRPA LNFASNVVIV EGHDFEEYKE 600 APVLGLPMYF AKNHEGSINN RWAQCEDCLK WRRLPLDSHP NYRWTCSDNK WDPKRSSCSA 660 VQESSAEITH LLPSRAGSCK RSNVIFENEN ENVNENAEVI DGLDTLANLA ILGEGKSQPS 720 SSQPTTKHPR HRPGCTCIVC IQPPSGKGPK HKQTCDCNVC LTVKRRFRTL MLRREKRQSE 780 KEAVISWPPP YPLLQNSGAN SSPQMPIENN VVVNAESERK RTAPSPIKTQ IDLNLQPERE 840 EEPSPVANSV NSMNLLTPNI

Sequence ? help Back to Top

Protein Sequence Length: 860 aa Download sequence

MSSSSAMATS GRKICFNTQC KKVITEQTRR KGWKLRSGDY SELCERCFSS FDHGNFCETF  60
HSNAAGWRKC ESCGKRIHCG CIVSIPVYML LDVGGVECMA CVRNSFSAVS NQISSPPVAL  120
STKLPERSKA FPVKSWNQVS GSFPGQWRHP TNIWNSSSIQ SDLHQRLSYE FDRPNAERLM  180
AGARSSFSSQ EKKSEDIHEK IASSGPNHVA QDMNGENNLI TMRKVMASDP STSCFSGIKF  240
EAHQISHGSS SVNSKGDSRS LLMGLSAPFS PINGTNDPSQ VSTTQPQRQV ASSTLSKQCY  300
PNSLSSIDST SESPAHMRNG KGRFDPGARS HLLPRYWPRI TDQELQQISG DSNSAITPLF  360
EKMLSASDAG RIGRLVLPKK CAEAYFPLIS QPEGLPLKMQ DASGKEWVFQ FRFWPNNNSR  420
MYVLEGVTPC IQSMQLQAGD TVTFSRIDPE GKLVMGFRKA ANVSNNEQDI QSAKDGNGGS  480
TPSDVKPNTV DYIAIPPLLP HKGNKESRNQ TNAADKASWS KNDKSEFILK DVCAPKFDIA  540
LCRRKGSFLI SKSKRLRIES AESIELKLTW EEAQVLLRPA LNFASNVVIV EGHDFEEYKE  600
APVLGLPMYF AKNHEGSINN RWAQCEDCLK WRRLPLDSHP NYRWTCSDNK WDPKRSSCSA  660
VQESSAEITH LLPSRAGSCK RSNVIFENEN ENVNENAEVI DGLDTLANLA ILGEGKSQPS  720
SSQPTTKHPR HRPGCTCIVC IQPPSGKGPK HKQTCDCNVC LTVKRRFRTL MLRREKRQSE  780
KEAVISWPPP YPLLQNSGAN SSPQMPIENN VVVNAESERK RTAPSPIKTQ IDLNLQPERE  840
EEPSPVANSV NSMNLLTPNI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	764	777	KRRFRTLMLRREKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	1e-141	B3 family protein