PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020682691.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Protein Properties

Length: 853aa MW: 94705.9 Da PI: 8.5639

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020682691.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.1	3.9e-19	353	452	1	98
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k l+ sd+++ grlvlpkk+ae++ + ++e+ l+++d sg++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e XP_020682691.1 353 FEKMLSASDAGRIGRLVLPKKCAEAYfpliS--QPEGLPLKMQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PE 443 89************************654..445667***********99899999999.*******************987.77 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++lv+++++ XP_020682691.1 444 GKLVMGFRK 452 777777665 PP

Sequence ? help Back to Top
Protein Sequence Length: 853 aa Download sequence
MSSSSAMATS GRKICFNTQC KKVITEQTRR KGWKLRSGDY SELCERCFSS FDHGNFCETF 60 HSNAAGWRKC ESCGKRIHCG CIVSIPVYML LDVGGVECMA CVSNQISSPP VALSTKLPER 120 SKAFPVKSWN QVSGSFPGQW RHPTNIWNSS SIQSDLHQRL SYEFDRPNAE RLMAGARSSF 180 SSQEKKSEDI HEKIASSGPN HVAQDMNGEN NLITMRKVMA SDPSTSCFSG IKFEAHQISH 240 GSSSVNSKGD SRSLLMGLSA PFSPINGTND PSQVSTTQPQ RQVASSTLSK QCYPNSLSSI 300 DSTSESPAHM RNGKGRFDPG ARSHLLPRYW PRITDQELQQ ISGDSNSAIT PLFEKMLSAS 360 DAGRIGRLVL PKKCAEAYFP LISQPEGLPL KMQDASGKEW VFQFRFWPNN NSRMYVLEGV 420 TPCIQSMQLQ AGDTVTFSRI DPEGKLVMGF RKAANVSNNE QDIQSAKDGN GGSTPSDVKP 480 NTVDYIAIPP LLPHKGNKES RNQTNAADKA SWSKNDKSEF ILKDVCAPKF DIALCRRKGS 540 FLISKSKRLR IESAESIELK LTWEEAQVLL RPALNFASNV VIVEGHDFEE YKEAPVLGLP 600 MYFAKNHEGS INNRWAQCED CLKWRRLPLD SHPNYRWTCS DNKWDPKRSS CSAVQESSAE 660 ITHLLPSRAG SCKRSNVIFE NENENVNENA EVIDGLDTLA NLAILGEGKS QPSSSQPTTK 720 HPRHRPGCTC IVCIQPPSGK GPKHKQTCDC NVCLTVKRRF RTLMLRREKR QSEKEAVISW 780 PPPYPLLQNS GANSSPQMPI ENNVVVNAES ERKRTAPSPI KTQIDLNLQP EREEEPSPVA 840 NSVNSMNLLT PNI

Sequence ? help Back to Top

Protein Sequence Length: 853 aa Download sequence

MSSSSAMATS GRKICFNTQC KKVITEQTRR KGWKLRSGDY SELCERCFSS FDHGNFCETF  60
HSNAAGWRKC ESCGKRIHCG CIVSIPVYML LDVGGVECMA CVSNQISSPP VALSTKLPER  120
SKAFPVKSWN QVSGSFPGQW RHPTNIWNSS SIQSDLHQRL SYEFDRPNAE RLMAGARSSF  180
SSQEKKSEDI HEKIASSGPN HVAQDMNGEN NLITMRKVMA SDPSTSCFSG IKFEAHQISH  240
GSSSVNSKGD SRSLLMGLSA PFSPINGTND PSQVSTTQPQ RQVASSTLSK QCYPNSLSSI  300
DSTSESPAHM RNGKGRFDPG ARSHLLPRYW PRITDQELQQ ISGDSNSAIT PLFEKMLSAS  360
DAGRIGRLVL PKKCAEAYFP LISQPEGLPL KMQDASGKEW VFQFRFWPNN NSRMYVLEGV  420
TPCIQSMQLQ AGDTVTFSRI DPEGKLVMGF RKAANVSNNE QDIQSAKDGN GGSTPSDVKP  480
NTVDYIAIPP LLPHKGNKES RNQTNAADKA SWSKNDKSEF ILKDVCAPKF DIALCRRKGS  540
FLISKSKRLR IESAESIELK LTWEEAQVLL RPALNFASNV VIVEGHDFEE YKEAPVLGLP  600
MYFAKNHEGS INNRWAQCED CLKWRRLPLD SHPNYRWTCS DNKWDPKRSS CSAVQESSAE  660
ITHLLPSRAG SCKRSNVIFE NENENVNENA EVIDGLDTLA NLAILGEGKS QPSSSQPTTK  720
HPRHRPGCTC IVCIQPPSGK GPKHKQTCDC NVCLTVKRRF RTLMLRREKR QSEKEAVISW  780
PPPYPLLQNS GANSSPQMPI ENNVVVNAES ERKRTAPSPI KTQIDLNLQP EREEEPSPVA  840
NSVNSMNLLT PNI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	757	770	KRRFRTLMLRREKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	1e-141	B3 family protein