PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020682881.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

LBD

Protein Properties

Length: 291aa MW: 31132.9 Da PI: 9.264

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020682881.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.8	1.3e-36	7	109	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC++dC++ap+f++e+ +++fa++h++FGasn +kll+++p+ +r +a+ +++yeA+ar++dPv+G+v++i +lqqq++ l+a+ XP_020682881.2 7 PCGACKFLRRKCTADCIFAPHFCSESssSASFAAIHRIFGASNASKLLHHVPDGDRGEAAITIAYEAQARLSDPVHGCVAHIIALQQQVAILQAQ 101 7*******************99763469************************************************************* PP DUF260 94 lallkeel 101 l++++++l XP_020682881.2 102 LVHARAQL 109 999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MAGAGSPCGA CKFLRRKCTA DCIFAPHFCS ESSSSASFAA IHRIFGASNA SKLLHHVPDG 60 DRGEAAITIA YEAQARLSDP VHGCVAHIIA LQQQVAILQA QLVHARAQLA YGAGLSQLAY 120 RNSCPSLDAN NAFIHVYSNG HSMALQSSLV EEALSAQISS KKRTAKGELQ DLQLLAVGMS 180 MKRPELVPLC IRVNPIESIS TPLAIRSCAC SAKSHRWSFI RVLIQQNPAT GLSFACLFSK 240 IPPRGPLFMR LFSQIPLPAL PSSNYSAKSC SGATTRDRLQ ADATTKRLDA T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	7e-32	LBD family protein