PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020682892.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 291aa MW: 33548.1 Da PI: 9.0748

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020682892.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.4	1.4e-17	10	57	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv+ v ++G ++W+ Ia+ g++Rt+k+c++rw +yl XP_020682892.2 10 KGPWTEQEDLQLVCFVSLFGERRWDFIAKVSGLKRTGKSCRLRWVNYL 57 79********************************************97 PP
2	Myb_DNA-binding	55.9	9.5e-18	63	108	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr T++E+ l+++++ q+G++ W++Iar+++ gRt++++k++w++++ XP_020682892.2 63 RGRITPQEERLILELHSQWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MVVTKEGIRK GPWTEQEDLQ LVCFVSLFGE RRWDFIAKVS GLKRTGKSCR LRWVNYLHPG 60 LKRGRITPQE ERLILELHSQ WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK MAQERKKSSP 120 LSSSTCSSES EQLEEAVGME KHEQSSYMMT RALDIKEEDE VLKVYPMDQI WNEIAGTLES 180 TTSGLSFERY GQEACNISCN SASMPSPLWQ NCAESLWKID DDDDDVDLSR VLRHDRLTDA 240 VELRRGRTIA LEAHLRGSLQ GSANVREFKR TSAARILVGV RVSCATRRKG M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	3e-75	MYB family protein