PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020682947.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 248aa MW: 27040.9 Da PI: 9.092

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020682947.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00085	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H XP_020682947.1 74 FVCKTCNKCFPTFQALGGHRTSH 96 89**********99998888777 PP
2	zf-C2H2	13.4	0.00023	136	158	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg +Fs+ L H+r+H XP_020682947.1 136 HECVTCGAVFSSGQALGGHMRRH 158 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MDAGEEAIVV PHAIKRRRTK RKKQFPVTMA PTSSSSSEEK DMANCLILLA GGPPPKKIKS 60 KTVAPNGKAK VIFFVCKTCN KCFPTFQALG GHRTSHKKHP ITPVKEKKTG EIEEDSIQLT 120 MNSFPNSNNA KAARVHECVT CGAVFSSGQA LGGHMRRHRQ TSLPEPVEAK KEAKNKKENI 180 VMSLDLNLPA SEDDNILSAG GELPRSTSPA APSSFSFESK PPLLSMSLFW IAPTDEQPED 240 QSEDDSLF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	22	RRRTKRK
2	17	59	RRTKRKKQFPVTMAPTSSSSSEEKDMANCLILLAGGPPPKKIK
3	20	62	RRTKRKKQFPVTMAPTSSSSSEEKDMANCLILLAGGPPPKKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-31	C2H2 family protein