PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020682962.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family LBD
Protein Properties Length: 213aa    MW: 23315.3 Da    PI: 6.5859
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020682962.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.31.5e-397106199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasnv+kll +lp ++r++a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+l
  XP_020682962.1   7 PCGACKFLRRKCVRGCVFAPYFCHEQgASHFAAIHKVFGASNVSKLLMHLPVTDRSEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVSLQAQL 101
                     7*************************89******************************************************************* PP

          DUF260  95 allke 99 
                     a+lk+
  XP_020682962.1 102 ASLKA 106
                     99886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MTGLGSPCGA CKFLRRKCVR GCVFAPYFCH EQGASHFAAI HKVFGASNVS KLLMHLPVTD  60
RSEAAVTISY EAQARLQDPI YGCVAHIFAL QQQVVSLQAQ LASLKAHQAA QGVGNNNIIG  120
LTEASIAQEA GKAYNRYASY QQDVQGLIMS QAIDERTNQP SVSNHMMNCE SSSQEDLISM  180
SVEDESFCGM RAAYNYHDLE DLQSIAFAYL HRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.12e-54LBD family protein