PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020683160.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CO-like

Protein Properties

Length: 459aa MW: 50129.8 Da PI: 6.6258

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020683160.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.6	2e-06	12	42	5	36
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ ++e + ++C+ + lC C + H g XP_020683160.1 12 ACDYCSEATAVIYCRADTARLCVACDRQVH-G 42 7**************************999.4 PP
2	zf-B_box	21	7e-07	53	95	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 ++C+++++ ++ Ce + lC+dC + H+g Ht XP_020683160.1 53 SQICDKCGDAAATARCEAEKLALCHDCGFDVHSGsadggagHT 95 689****99*******************88888888855 PP
3	CCT	59.9	8.6e-21	407	451	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R a++RYkeKrktR+++K+irYesRKa+A+ R RvKGrFvk++e XP_020683160.1 407 RGTAMQRYKEKRKTRRYDKRIRYESRKARADIRRRVKGRFVKSSE 451 6789**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MDEESTGERS LACDYCSEAT AVIYCRADTA RLCVACDRQV HGANALSRKH VRSQICDKCG 60 DAAATARCEA EKLALCHDCG FDVHSGSADG GAGHTHGVIE GFSGCPSFVE LAASWGLEMG 120 LKESGECGEQ IMLAGLGAID SVFADLYVPC FAGRGRDGKR KPAVIQQLEE MARLDFSSVA 180 TSQLSPRTPC RSATGCGGGD EDCRSLQQLP FASLLMMAPS DCADLKENRR VVEEADLIWG 240 CGLSDHASQI WDFNSGRTRE HNATSPIQDG HVGNNSGFTI KSYNDLLKER TFANTEVLEG 300 FYEKNCPSNE DVSSTNNSIY HMPSQSLGAA DNILSKWKSN KCNSRLNGPS SSSNNLSTIS 360 CPAVSSSHNP VLGSNSKEIS FGEQPLIRTE LVDSFKRVDT ELLAEKRGTA MQRYKEKRKT 420 RRYDKRIRYE SRKARADIRR RVKGRFVKSS ENADDENHS

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MDEESTGERS LACDYCSEAT AVIYCRADTA RLCVACDRQV HGANALSRKH VRSQICDKCG  60
DAAATARCEA EKLALCHDCG FDVHSGSADG GAGHTHGVIE GFSGCPSFVE LAASWGLEMG  120
LKESGECGEQ IMLAGLGAID SVFADLYVPC FAGRGRDGKR KPAVIQQLEE MARLDFSSVA  180
TSQLSPRTPC RSATGCGGGD EDCRSLQQLP FASLLMMAPS DCADLKENRR VVEEADLIWG  240
CGLSDHASQI WDFNSGRTRE HNATSPIQDG HVGNNSGFTI KSYNDLLKER TFANTEVLEG  300
FYEKNCPSNE DVSSTNNSIY HMPSQSLGAA DNILSKWKSN KCNSRLNGPS SSSNNLSTIS  360
CPAVSSSHNP VLGSNSKEIS FGEQPLIRTE LVDSFKRVDT ELLAEKRGTA MQRYKEKRKT  420
RRYDKRIRYE SRKARADIRR RVKGRFVKSS ENADDENHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	4e-71	CO-like family protein