PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020683449.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HB-other

Protein Properties

Length: 1850aa MW: 208080 Da PI: 5.8425

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020683449.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.8	7.8e-18	30	84	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR +++qle+Le+ ++ + yps++ r+eL++k+gL++rq ++WF+ rR k++k XP_020683449.1 30 KRKMKSPYQLEILEKTYAVETYPSETVRAELSAKTGLSDRQLQMWFCHRRLKDRK 84 79999************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1850 aa Download sequence
MMEIADSGDG NPPPEGWKKL PEGGEDKPPK RKMKSPYQLE ILEKTYAVET YPSETVRAEL 60 SAKTGLSDRQ LQMWFCHRRL KDRKFAPGKK AKKVEEPLSP PPSGREMIAP PGKSSICPSS 120 IPFPVGSGEL RKAVARVSPG VSRIGAEVSL GKRYYEQPIL VPQPRQLSVL ELRIIASVEG 180 QLGEPLRDDG PILGVEFDPL PPGAFGAPIE SETPAHSTHV HASSLQFLDR LESSGLSTQG 240 KQLVRSYDGK SMKTSAFLPS MDQSFLPSSL TGKRKIAGSG VHAVHPQVPP RTLQEYQFLP 300 EQPSIRSESY ERVPQSHFYD SPVAAPSSRM PSLPAGSQYL HGNDHVAPTY TFQGHISSSG 360 LLSQQAREQL YTNEYDTAPH GSPFGNSTAD PQFGIHQSLG LEDPFSSSER RIIREEDSCR 420 TDRKRKSEEA RIAKEVEAHE KRIRKELEKQ DSLRRKREEL MRREMERLDR DRRKEEERML 480 REKQREEERF LREQRRETER REKILLKESR RAEKLRRKEE LRKEKEAARL KAANERATAR 540 RIAKESMELI EDERLELMEL AASRKGLASI VSLDGETLEQ LDSFRGLLNT FPPKSVKLKK 600 PFSVQPWIDS EENVGNFLMA WKFLITFADT LGLWPFTLDE FLQSLHDYDS RLLGEIHVAL 660 LKSVIKDIEE FSRTPAVAPG VNQNSVANPG GGHPHIVEGA YAWGFNICSW QQHLNYFTWP 720 EILRQFALSA GFGPQLKKRN VERTYFRDGH EGNDGEDVIS TLRNGAAAEN AVALMQVRGY 780 NHRRRPRHRL TPGTVKFAAF YVLSLEGSKG LTILEVAEKI QKSGLRDLTT SKTPEASIAA 840 ALSRDTKLFE RTAPSTYCVR TAFRKNPVDA EAVLAAAREK IQIFQCGLSD SDEVEKDAED 900 VDDGERDEDS EFEGADDPEV DDCSVEVKMN KDLPCMTKLK GVVPSNSVNN KKKEILCDGI 960 VLTPPCSLRN SDKDFQVDTL VHSNQASISG AIKSTEISSN CNGGRNTNME DAEIDESNLG 1020 DPWVQGLTEG DYTDLSVEER LNALVALIGV AIEGNSIRVI LEERLEAATA LKKQMWAEAQ 1080 LDKRRYKEEY LNKSQYSSFL NCKPESTQVI VGTEGSQTPL QLPYTKESDG NLEFLSNDQF 1140 PDVSNLNNIH NMSTERHVLG QELSTNPDSF PLQHYGHAAE KPRFQLKSYI GHKAEQLYVY 1200 RSLPLGQDRR RNRYWLFSTS TSPNDPGSGR IFFESKDGFW RLIDSEETFD TLLAALDTRG 1260 IRESHLHSML QRIETTFKEA LTRHKKHFPS TNTNEFLFNG GSNELIPSPD CYAEHDSPSS 1320 VHSGVTSDTI EYSKSFRVDL GRSKMERNSA LKRYRVFIKW MWKECYNSLV LCAMRYGKKR 1380 CSELLQTCHI CYQSYFMEER HCTSCHRMFK SIHKGDAMFA EHIAICITKR KTDKESESQI 1440 LDSSLPMGVR LLKAQLSLIE VSIPAEALQP FWTEGYRKSW GVKLNSASSA DDFLQLLTLL 1500 EGAIKRDHLS SNFETTNELL SSAKASSAAN NTLISGSVPV LPWIPDTTSA VALRLMELDA 1560 SISYMPQQKS MSQKEGNSQD FFKPSRFTIV KNLHEFEPAG TPLQLDYQRE GRWLDSGSGR 1620 RGRGRGGRGG RVGRGRGRGG RGTRASAIVS RAEFNIENIN SLDKTRKYSR RGRTRGRGRR 1680 RGRRSVRPRQ RSVNQAPTSR AAFFHGFGDV GACSKEESAE ESLRSSGGDE WGIEARTYNK 1740 QDENSAGSQS DDDNEQASGD EYDDQVTEYS TRYNQPSPMG IMDDESEDEE VDEDVGEEED 1800 YGDQATLEDM DGDVDEEDEE MGDDDEMTDA DDGNGDEDEG PSSFSSGYSD

Sequence ? help Back to Top

Protein Sequence Length: 1850 aa Download sequence

MMEIADSGDG NPPPEGWKKL PEGGEDKPPK RKMKSPYQLE ILEKTYAVET YPSETVRAEL  60
SAKTGLSDRQ LQMWFCHRRL KDRKFAPGKK AKKVEEPLSP PPSGREMIAP PGKSSICPSS  120
IPFPVGSGEL RKAVARVSPG VSRIGAEVSL GKRYYEQPIL VPQPRQLSVL ELRIIASVEG  180
QLGEPLRDDG PILGVEFDPL PPGAFGAPIE SETPAHSTHV HASSLQFLDR LESSGLSTQG  240
KQLVRSYDGK SMKTSAFLPS MDQSFLPSSL TGKRKIAGSG VHAVHPQVPP RTLQEYQFLP  300
EQPSIRSESY ERVPQSHFYD SPVAAPSSRM PSLPAGSQYL HGNDHVAPTY TFQGHISSSG  360
LLSQQAREQL YTNEYDTAPH GSPFGNSTAD PQFGIHQSLG LEDPFSSSER RIIREEDSCR  420
TDRKRKSEEA RIAKEVEAHE KRIRKELEKQ DSLRRKREEL MRREMERLDR DRRKEEERML  480
REKQREEERF LREQRRETER REKILLKESR RAEKLRRKEE LRKEKEAARL KAANERATAR  540
RIAKESMELI EDERLELMEL AASRKGLASI VSLDGETLEQ LDSFRGLLNT FPPKSVKLKK  600
PFSVQPWIDS EENVGNFLMA WKFLITFADT LGLWPFTLDE FLQSLHDYDS RLLGEIHVAL  660
LKSVIKDIEE FSRTPAVAPG VNQNSVANPG GGHPHIVEGA YAWGFNICSW QQHLNYFTWP  720
EILRQFALSA GFGPQLKKRN VERTYFRDGH EGNDGEDVIS TLRNGAAAEN AVALMQVRGY  780
NHRRRPRHRL TPGTVKFAAF YVLSLEGSKG LTILEVAEKI QKSGLRDLTT SKTPEASIAA  840
ALSRDTKLFE RTAPSTYCVR TAFRKNPVDA EAVLAAAREK IQIFQCGLSD SDEVEKDAED  900
VDDGERDEDS EFEGADDPEV DDCSVEVKMN KDLPCMTKLK GVVPSNSVNN KKKEILCDGI  960
VLTPPCSLRN SDKDFQVDTL VHSNQASISG AIKSTEISSN CNGGRNTNME DAEIDESNLG  1020
DPWVQGLTEG DYTDLSVEER LNALVALIGV AIEGNSIRVI LEERLEAATA LKKQMWAEAQ  1080
LDKRRYKEEY LNKSQYSSFL NCKPESTQVI VGTEGSQTPL QLPYTKESDG NLEFLSNDQF  1140
PDVSNLNNIH NMSTERHVLG QELSTNPDSF PLQHYGHAAE KPRFQLKSYI GHKAEQLYVY  1200
RSLPLGQDRR RNRYWLFSTS TSPNDPGSGR IFFESKDGFW RLIDSEETFD TLLAALDTRG  1260
IRESHLHSML QRIETTFKEA LTRHKKHFPS TNTNEFLFNG GSNELIPSPD CYAEHDSPSS  1320
VHSGVTSDTI EYSKSFRVDL GRSKMERNSA LKRYRVFIKW MWKECYNSLV LCAMRYGKKR  1380
CSELLQTCHI CYQSYFMEER HCTSCHRMFK SIHKGDAMFA EHIAICITKR KTDKESESQI  1440
LDSSLPMGVR LLKAQLSLIE VSIPAEALQP FWTEGYRKSW GVKLNSASSA DDFLQLLTLL  1500
EGAIKRDHLS SNFETTNELL SSAKASSAAN NTLISGSVPV LPWIPDTTSA VALRLMELDA  1560
SISYMPQQKS MSQKEGNSQD FFKPSRFTIV KNLHEFEPAG TPLQLDYQRE GRWLDSGSGR  1620
RGRGRGGRGG RVGRGRGRGG RGTRASAIVS RAEFNIENIN SLDKTRKYSR RGRTRGRGRR  1680
RGRRSVRPRQ RSVNQAPTSR AAFFHGFGDV GACSKEESAE ESLRSSGGDE WGIEARTYNK  1740
QDENSAGSQS DDDNEQASGD EYDDQVTEYS TRYNQPSPMG IMDDESEDEE VDEDVGEEED  1800
YGDQATLEDM DGDVDEEDEE MGDDDEMTDA DDGNGDEDEG PSSFSSGYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	783	790	RRRPRHRL
2	1671	1681	RGRTRGRGRRR
3	1673	1683	RGRTRGRGRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	HB-other family protein