PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020683513.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MIKC_MADS

Protein Properties

Length: 192aa MW: 22464.9 Da PI: 5.8394

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020683513.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72.6	3.4e-23	10	59	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien ++rq tf kRr g++KKA EL vLCda+ ++++fss+gkly y XP_020683513.1 10 KRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSSSGKLYHYH 59 79**********************************************96 PP
2	K-box	22.5	4.9e-09	85	159	15	89
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 ++ ++++ +++ e L+re+R + ++ e+ +l Lq +eq+Le ++kk+R+ K++ + +++e+l ++ k+ q XP_020683513.1 85 QNGGENVEEVERMCEILEREIRFMRIDEGEEYTLPVLQVIEQNLEVAMKKVREEKDRKIQAEMETLHRMVKDRQL 159 56667888899999*****************************************************99988776 PP

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence
MMGRGRLEIK RIENPTQRQS TFYKRRDGLF KKARELAVLC DADLLLLLFS SSGKLYHYHS 60 PSVSNVQELL RRYEVASQTR ILKDQNGGEN VEEVERMCEI LEREIRFMRI DEGEEYTLPV 120 LQVIEQNLEV AMKKVREEKD RKIQAEMETL HRMVKDRQLD GCGLCEKQSP TPLLLGEQPL 180 FGYELDLKLG FD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26310.1	8e-22	MIKC_MADS family protein