PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020683588.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family FAR1
Protein Properties Length: 176aa    MW: 20673 Da    PI: 6.1645
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020683588.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.41.8e-2161147289
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                      Y++Y++++GFsvrk+++++  ++++ ++++fvCsk g+++ ++ +  +++ +r+ trtgC a+++ + ++ g w+v+k+ ++ nH+l
  XP_020683588.1  61 AYRKYGYNLGFSVRKDHHSYWPNSRNLKSKDFVCSKAGFKKLHDLN-IQRKYQRSDTRTGCPAMIRFTVDEGGYWKVKKFIENLNHDL 147
                     59*****************************************999.99999**********************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MPMKKEIDLE EDVGFYEQTL FSQVSEEADN LENADVQETS AHEAEHVEPD VYVNEKEAYE  60
AYRKYGYNLG FSVRKDHHSY WPNSRNLKSK DFVCSKAGFK KLHDLNIQRK YQRSDTRTGC  120
PAMIRFTVDE GGYWKVKKFI ENLNHDLPRP EDRHLLRSCK NMCDEKQSEG RNIASI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.14e-12FAR1 family protein