PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020683666.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C2H2
Protein Properties Length: 319aa    MW: 34907.3 Da    PI: 4.5667
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020683666.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-05294315323
                     ETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                     C+ C+ksF++   L++H +  H
  XP_020683666.1 294 CKTCSKSFNTENALQSHTKAkH 315
                     *****************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MEFWGVEVKP GQTVKCEPGD EGYLHLSQAS LGEIKKDKGT GNVPVFVKFN DQKLVLGTLS  60
TENCAQIQYD IVFEKEFELS HGSKNTSVFF VGYKSIHENY ASEDDLDGSD VEAYLNDPKE  120
IGEGWLKKKN LVKPGKVAAA DKDDTVAAKA KTQTGKQDKV EKPKLDDIQN KADDDDEEDK  180
DEDDSNEESD DDDDYNDDEE LVKGMIDSDS DDEDKDDSSE DEKANLKVEN GKKRSADAAL  240
KSPIGKKSKT ITPAGNLKIG DTKKGSQTPI PQITKQAGNK AKQQTPKSSG SVMCKTCSKS  300
FNTENALQSH TKAKHSGAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-28C2H2 family protein