PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020683720.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C2H2
Protein Properties Length: 257aa    MW: 28823.3 Da    PI: 10.1788
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020683720.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-054970223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C+ C++sFs+   L  H+r H
  XP_020683720.1 49 RCSECSMSFSSTKALFGHLRIH 70
                    7*******************99 PP
2zf-C2H213.50.00021191213123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +C+k+F++   L  H r H
  XP_020683720.1 191 HQCDKCDKVFNSGQALGGHKRAH 213
                     79***********9999999988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
METQSLRVSS PVPTLAFEKQ KEISLKIMFK PLQKKQQEMN ASSSSAEIRC SECSMSFSST  60
KALFGHLRIH RKSTDVARKA SLLPLRKAKL SEEFIAACIL MGMKRSKLEA DIDDAKRIKL  120
RWVCAKLNKQ RKNVKEVTSN QSMKHYQRKI CKKVAPSLLA LAEQSVGQWN RENNNDEMSA  180
GVVGSAEMEI HQCDKCDKVF NSGQALGGHK RAHYRGPPLC RPGSNARSQA TLAAVATAEV  240
VFHDFDLNEP MEEVFRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.18e-10C2H2 family protein