PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020683918.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 453aa MW: 49017.2 Da PI: 6.5145

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020683918.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.7e-09	270	317	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++ Lq XP_020683918.1 270 SHSLAERVRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQLLQ 317 8***********************9....556*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MEKEAFFGNS TVINWQMRSP DAAASLPNMN SGHVNIVWDQ TIDQSAKFGS ALSSLVSSPS 60 SNPPAAPGGG DSVVIRELIG RLGSICNSDE ISAPSPHYHS ANNSCYSTPM NSPPKLNLSI 120 FPNPAHMPFS ADPGFVERAA RCSTFGCSGG GSHGGEQFIF PEVGKLGNAP EESCGSGNAK 180 KRKAVMKGKG KEAPLSSSIT AVTNPPKASV GGLNTKRSKP SEKTGIEEES ARQDGDAASK 240 KMEEEKIAKP PEAVKDYIHV RARRGQATDS HSLAERVRRE KISERMKLLQ DLVPGCSKVT 300 GKAVMLDEII NYVQLLQRQV EFLSMKLATV NPQIDFNMEN FVNKDMEIHQ NCGLLPPQPV 360 YPLEATASSF SFANLPERTP LISINGLELQ SQVNPFSQPN LSRNLTMQLP PLEGFADTAC 420 QLGTFWDDDL RTVVQMGFSQ NQENLFSSQS FQG

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MEKEAFFGNS TVINWQMRSP DAAASLPNMN SGHVNIVWDQ TIDQSAKFGS ALSSLVSSPS  60
SNPPAAPGGG DSVVIRELIG RLGSICNSDE ISAPSPHYHS ANNSCYSTPM NSPPKLNLSI  120
FPNPAHMPFS ADPGFVERAA RCSTFGCSGG GSHGGEQFIF PEVGKLGNAP EESCGSGNAK  180
KRKAVMKGKG KEAPLSSSIT AVTNPPKASV GGLNTKRSKP SEKTGIEEES ARQDGDAASK  240
KMEEEKIAKP PEAVKDYIHV RARRGQATDS HSLAERVRRE KISERMKLLQ DLVPGCSKVT  300
GKAVMLDEII NYVQLLQRQV EFLSMKLATV NPQIDFNMEN FVNKDMEIHQ NCGLLPPQPV  360
YPLEATASSF SFANLPERTP LISINGLELQ SQVNPFSQPN LSRNLTMQLP PLEGFADTAC  420
QLGTFWDDDL RTVVQMGFSQ NQENLFSSQS FQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-77	bHLH family protein