PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020684021.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NF-YC

Protein Properties

Length: 254aa MW: 28250.8 Da PI: 4.9071

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020684021.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	64.2	2.4e-20	7	86	19	98
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P +rikki++adedv +i+ +Pvl+ska elf+ +l r++ + ++ +tl+ ++++vt fdfl+d+v + XP_020684021.1 7 TRFPASRIKKIMQADEDVGKIALPVPVLVSKALELFLQDLCDRAYEVTIQKGAKTLNSLHLKQCVTTNSAFDFLTDVVNK 86 579**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
MRKKLGTRFP ASRIKKIMQA DEDVGKIALP VPVLVSKALE LFLQDLCDRA YEVTIQKGAK 60 TLNSLHLKQC VTTNSAFDFL TDVVNKVPNL GGTESFADEK GISRRRKALV HDGEILTEDL 120 RSAKAAMRSI NMSPRGRARG RGRGRGRPPL NRTIEKESSY MKFEEEIDLS PEHDDPDTPA 180 AETEVAEKEK ENKNPTDLII TNTAALAPTT TEAKQEGYSA WPLPDVVTNL GIEPSNLVNL 240 NMQIDEDEDY DNED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	144	RGRARGRGRG
2	135	145	RGRARGRGRGR
3	137	146	RGRARGRGRG
4	137	147	RGRARGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-48	NF-YC family protein