PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020684082.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 225aa    MW: 25265.2 Da    PI: 8.4783
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020684082.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.85e-221965147
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    krien+  rqv fskRr g++KKA ELS+LC+ae+ +++fs+ gk +
  XP_020684082.2 19 KRIENEEARQVCFSKRRMGLFKKATELSILCGAEIGIVVFSPAGKPF 65
                    79*****************************************9855 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MMMVRKKRQS MGRQKIAMKR IENEEARQVC FSKRRMGLFK KATELSILCG AEIGIVVFSP  60
AGKPFSFGHP SLDYITKRFL GGGGNGNDND VEVVGPWCGM FVEGQKLLQL NQEHAGLTEK  120
LEKARRMRAE LEAEVAAQRG GSSLPCDVEV HEMGVEELES FQKRLEELQR GVANRREELE  180
ILCMDTKIVR GGVPSQLGYG GVYLGVHNGL YLTPTPIDWF YRHGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-29M-type_MADS family protein