PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020684210.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 203aa MW: 23355.3 Da PI: 8.333

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020684210.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.9	5.6e-19	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd++l +++ ++G g+W++ a++ g++Rt+k+c++rw++yl XP_020684210.1 16 RGPWTVEEDLILTNYISKHGEGRWNSLAKCAGLKRTGKSCRLRWLNYL 63 89********************************************97 PP
2	Myb_DNA-binding	52.4	1.2e-16	69	112	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE+ l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_020684210.1 69 RGNITAEEQFLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 112 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence
METGKQKSSV EEELRRGPWT VEEDLILTNY ISKHGEGRWN SLAKCAGLKR TGKSCRLRWL 60 NYLRPDVRRG NITAEEQFLI LELHSRWGNR WSKIAQHLPG RTDNEIKNYW RTRVQKHANQ 120 QWMPRLLERI RTAVDSSRAI SNAHTTLTSS NDNSKFSLPP VPGCCNDVVE EEGWPEFPTP 180 SDEGSMLAGL WELSAMGSNM YVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G48000.1	3e-69	MYB family protein