PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020684277.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 733aa MW: 81351.9 Da PI: 6.9367

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020684277.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.9	6.4e-15	92	136	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE+ ++++a +++G W +I +++ ++t+ q++s+ qk+ XP_020684277.1 92 REKWTDEEHNRFLEALRLHGRA-WQRIQEHIS-TKTAVQIRSHAQKF 136 789***************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence
MPNRQLPSPA ITASMFLLVH KPTMARWAIV DRIALGANVR RRRSREERNR EIDMRLRPPE 60 FLSCFYGFFV MGMSPVRELA KMRKPYTITK QREKWTDEEH NRFLEALRLH GRAWQRIQEH 120 ISTKTAVQIR SHAQKFFLKL ENGTGGMSPG HPHDIEIPPP RPKRKPCSSY PRKTGAASQS 180 PFVEVKEKNL SQAFVSLGTD EVAMDTKIKE PVKVAIEQNT KQAFGEGTSS ASIYFHLNST 240 SEPLEQMPTL EELKETRSRI TKELRKNDSD LQIFGMSTDS RFGFTTEEKW QVLGHMEMPF 300 TSWKDNLQGG ENHENIPAQF EGTKYSDEDI SKSVSTQLEA NADLNLSLDS TRTTIHRTKN 360 SISSIHQAVP SISLHNPFSN DDNPFSALIN LTNYFPSLLV SALSQNPAVH QAASIAAASL 420 PPAYVDFSMQ SNSKLVGEAP EKQSSASSGI SAIVTATIAA AAAWWRVHGL LQSPSQPNHA 480 FTQVMVQATE SAQVPEDNSD SKGNFSQTHK RKFQQIEQQE TNIAIQPSSA LLEISSSPDT 540 CQSTKSARSP KSTKCAETAI CGIHDVDHVP GKKKHDPSSC DSNTSPSSEV EKDAALNKEE 600 AKGINEQGEQ GPSIIQEFGD TPGISKSSTE GLKQDSIAFE ELFYRQLLPH CFSPLHLDGN 660 WTTNSGNEEA PGLQIDLNRK VFTPSSTCNF SRENARSSIN NGSEVATFNR HLVETEERNN 720 TGQEESSGKR ACL

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence

MPNRQLPSPA ITASMFLLVH KPTMARWAIV DRIALGANVR RRRSREERNR EIDMRLRPPE  60
FLSCFYGFFV MGMSPVRELA KMRKPYTITK QREKWTDEEH NRFLEALRLH GRAWQRIQEH  120
ISTKTAVQIR SHAQKFFLKL ENGTGGMSPG HPHDIEIPPP RPKRKPCSSY PRKTGAASQS  180
PFVEVKEKNL SQAFVSLGTD EVAMDTKIKE PVKVAIEQNT KQAFGEGTSS ASIYFHLNST  240
SEPLEQMPTL EELKETRSRI TKELRKNDSD LQIFGMSTDS RFGFTTEEKW QVLGHMEMPF  300
TSWKDNLQGG ENHENIPAQF EGTKYSDEDI SKSVSTQLEA NADLNLSLDS TRTTIHRTKN  360
SISSIHQAVP SISLHNPFSN DDNPFSALIN LTNYFPSLLV SALSQNPAVH QAASIAAASL  420
PPAYVDFSMQ SNSKLVGEAP EKQSSASSGI SAIVTATIAA AAAWWRVHGL LQSPSQPNHA  480
FTQVMVQATE SAQVPEDNSD SKGNFSQTHK RKFQQIEQQE TNIAIQPSSA LLEISSSPDT  540
CQSTKSARSP KSTKCAETAI CGIHDVDHVP GKKKHDPSSC DSNTSPSSEV EKDAALNKEE  600
AKGINEQGEQ GPSIIQEFGD TPGISKSSTE GLKQDSIAFE ELFYRQLLPH CFSPLHLDGN  660
WTTNSGNEEA PGLQIDLNRK VFTPSSTCNF SRENARSSIN NGSEVATFNR HLVETEERNN  720
TGQEESSGKR ACL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.4	2e-30	MYB_related family protein