PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020684287.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 666aa MW: 73458.5 Da PI: 6.3664

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020684287.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47	5.7e-15	22	66	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE+ ++++a +++G W +I +++ ++t+ q++s+ qk+ XP_020684287.1 22 REKWTDEEHNRFLEALRLHGRA-WQRIQEHIS-TKTAVQIRSHAQKF 66 789***************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence
MGMSPVRELA KMRKPYTITK QREKWTDEEH NRFLEALRLH GRAWQRIQEH ISTKTAVQIR 60 SHAQKFFLKL ENGTGGMSPG HPHDIEIPPP RPKRKPCSSY PRKTGAASQS PFVEVKEKNL 120 SQAFVSLGTD EVAMDTKIKS YQEPVKVAIE QNTKQAFGEG TSSASIYFHL NSTSEPLEQM 180 PTLEELKETR SRITKELRKN DSDLQIFGMS TDSRFGFTTE EKWQVLGHME MPFTSWKDNL 240 QGGENHENIP AQFEGTKYSD EDISKSVSTQ LEANADLNLS LDSTRTTIHR TKNSISSIHQ 300 AVPSISLHNP FSNDDNPFSA LINLTNYFPS LLVSALSQNP AVHQAASIAA ASLPPAYVDF 360 SMQSNSKLVG EAPEKQSSAS SGISAIVTAT IAAAAAWWRV HGLLQSPSQP NHAFTQVMVQ 420 ATESAQVPED NSDSKGNFSQ THKRKFQQIE QQETNIAIQP SSALLEISSS PDTCQSTKSA 480 RSPKSTKCAE TAICGIHDVD HVPGKKKHDP SSCDSNTSPS SEVEKDAALN KEEAKGINEQ 540 GEQGPSIIQE FGDTPGISKS STEGLKQDSI AFEELFYRQL LPHCFSPLHL DGNWTTNSGN 600 EEAPGLQIDL NRKVFTPSST CNFSRENARS SINNGSEVAT FNRHLVETEE RNNTGQEESS 660 GKRACL

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence

MGMSPVRELA KMRKPYTITK QREKWTDEEH NRFLEALRLH GRAWQRIQEH ISTKTAVQIR  60
SHAQKFFLKL ENGTGGMSPG HPHDIEIPPP RPKRKPCSSY PRKTGAASQS PFVEVKEKNL  120
SQAFVSLGTD EVAMDTKIKS YQEPVKVAIE QNTKQAFGEG TSSASIYFHL NSTSEPLEQM  180
PTLEELKETR SRITKELRKN DSDLQIFGMS TDSRFGFTTE EKWQVLGHME MPFTSWKDNL  240
QGGENHENIP AQFEGTKYSD EDISKSVSTQ LEANADLNLS LDSTRTTIHR TKNSISSIHQ  300
AVPSISLHNP FSNDDNPFSA LINLTNYFPS LLVSALSQNP AVHQAASIAA ASLPPAYVDF  360
SMQSNSKLVG EAPEKQSSAS SGISAIVTAT IAAAAAWWRV HGLLQSPSQP NHAFTQVMVQ  420
ATESAQVPED NSDSKGNFSQ THKRKFQQIE QQETNIAIQP SSALLEISSS PDTCQSTKSA  480
RSPKSTKCAE TAICGIHDVD HVPGKKKHDP SSCDSNTSPS SEVEKDAALN KEEAKGINEQ  540
GEQGPSIIQE FGDTPGISKS STEGLKQDSI AFEELFYRQL LPHCFSPLHL DGNWTTNSGN  600
EEAPGLQIDL NRKVFTPSST CNFSRENARS SINNGSEVAT FNRHLVETEE RNNTGQEESS  660
GKRACL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.4	8e-31	MYB_related family protein