PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020684313.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family B3
Protein Properties Length: 354aa    MW: 39566.8 Da    PI: 7.0938
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020684313.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.22.2e-3085183193
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++     + + ++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  g+  +
  XP_020684313.1  85 FEKVVTPSDVGKLNRLVIPKQHAEKYfpldASTHDRGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGtGQtAS 179
                     99***************************966677999************************************************954343344 PP

                     E..E CS
              B3  90 felv 93 
                      +l+
  XP_020684313.1 180 HRLF 183
                     4455 PP
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    
MEFTHGRGDN RFYNEEEDEL EDDDRDEQNP PRGTDAARLY PFIPISSSSP SSSSAISLNC  60
EPSTSTTPAS SLPPSTTQVQ KEHMFEKVVT PSDVGKLNRL VIPKQHAEKY FPLDASTHDR  120
GLLLNFEDRN GKPWRFRYSY WNSSQSYVMT KGWSRFVKEK RLDAGDTVSF GRGTGQTASH  180
RLFIDWKRRP EPHLDLHNSH RIPHFPSSVP SFSHPHPYLS FSRSASAPWA AGRLFVPNAT  240
PPPASNYFYF RSTSALATRP NPVSTAGDPP VSMVLDSIPV AHGKEAAGEP KRVRLFGVNL  300
EQPYEGIDNT ETSGLLRLQL RSPFSSQELR LGGHESSSSS AKDSHHSPPF DLDM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-63B3 family protein