PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020684346.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 172aa    MW: 19136.1 Da    PI: 5.3255
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020684346.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-0770111955
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r RR++i ++ +eL +l+P       +K+s a++L  A +Y++ Lq
  XP_020684346.1  70 ARERRKKISTKTQELGRLIPGG-----EKMSTADMLVAAHKYVRFLQ 111
                     699*****************96.....7******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MALSFLSQFF EFDSEVTDAV MGLLMPECSS IHSVDFVFSS PPPPPPPPPL SWPESGETVR  60
QIVSPQSVAA RERRKKISTK TQELGRLIPG GEKMSTADML VAAHKYVRFL QAEESVLQYM  120
NEQKVRKGEG EELLQVLLAS PKIQERLSSE GKCLVPKEMV DDLVAKHLIV NN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-28bHLH family protein