PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020684394.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 699aa    MW: 77546.4 Da    PI: 6.1664
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020684394.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.6e-211671156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +++t+ q++eLe++F+ n++p++++r +L++ lgL+ rq+k+WFqNrR+++k
  XP_020684394.1 16 KKRYHRHTPRQIQELEAMFKINPHPDEKQRMQLSRDLGLEPRQIKFWFQNRRTQMK 71
                    688999***********************************************999 PP
2START154.96.5e-492104332206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                     la + ++el+++a+ +ep+W++      +++n +++ ++f++  v        ++e +r+sg v m++  lv  ++d + +W e ++     a t
  XP_020684394.1 210 LATRSMEELIRLAQTDEPLWTRIGtngrQILNLETYERIFPKP-VqqfrspdTRVESSRDSGDVMMNSLALVDMFMDPG-KWMELFPsivsNART 302
                     78899******************99999999999999999763.35789**99**************************.*******9999**** PP

                     EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                     +ev++ g      gal+lm+ e+  lsp+vp R+f f+Ry++ql+++ wvi d+S+  +++++  ss+ ++ +lpSg+li++++ng+skv+wveh
  XP_020684394.1 303 IEVLMHGmdgsrsGALVLMYGEFLGLSPVVPlREFFFLRYCQQLEQDLWVISDISILYPKENQ-FSSSTKC-RLPSGCLIQDMPNGYSKVVWVEH 395
                     **************************************************************9.5677776.69********************* PP

                     EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     ++ +++ p h+l++ lv sg+a+ga++w atlqr ce+
  XP_020684394.1 396 MEIEEKNPiHQLYHDLVDSGIAFGAQRWIATLQRMCER 433
                     ************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    
MDSGDEQDVT ESKGKKKRYH RHTPRQIQEL EAMFKINPHP DEKQRMQLSR DLGLEPRQIK  60
FWFQNRRTQM KTQHERADNC ALRSENDKIR CENIAMREAL KNAICPTCGS SQESEDSYFD  120
EQKLRMENAR LKEELDRVST ITSKYLGRPI TQLPPIQPLS VSSLDLTVGG YGNPGFAPSL  180
DIDQLGVGPP TMAFPFLTIS EIERPMMVEL ATRSMEELIR LAQTDEPLWT RIGTNGRQIL  240
NLETYERIFP KPVQQFRSPD TRVESSRDSG DVMMNSLALV DMFMDPGKWM ELFPSIVSNA  300
RTIEVLMHGM DGSRSGALVL MYGEFLGLSP VVPLREFFFL RYCQQLEQDL WVISDISILY  360
PKENQFSSST KCRLPSGCLI QDMPNGYSKV VWVEHMEIEE KNPIHQLYHD LVDSGIAFGA  420
QRWIATLQRM CERIACLMVT GNSPRDLGGV IPTAEGKRSM MRLSQRMVSN FCSTLGSSNG  480
HRWTAPAGLN DVGIRVTVHK CSDSGQPNGV FLTAATSIWL PFSPQAVFSF FRDERSRVQW  540
DVLSNGKAVQ EVTRIANGQH PGNCISLLRA AMNPSNPNEG NMLILQESCT DPSGSLVVYA  600
SIDLASINIA MSGEDTSYIP LLPSGFTVLP DGRPGTGSNA SSSSNPMGGS SGSVLTVAFQ  660
IMVSSLPSAK LNLESVATVN NIIGATVQQI KAALSSPGA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein