PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020684544.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

SBP

Protein Properties

Length: 349aa MW: 36965.9 Da PI: 8.6522

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020684544.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.8	4.7e-41	124	200	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq+egC adl++ak+yhrrhkvCe+hska+ v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q XP_020684544.2 124 RCQAEGCGADLTHAKHYHRRHKVCEFHSKASIVIAAGLSQRFCQQCSRFHVLSEFDQGKRSCRKRLADHNRRRRKSQ 200 6**************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MLDYEWTNPA AAAAAAMLLF GDGGEVGPTP FDQYGGSGNG LAAGDLFAPT AAGGLFSPVG 60 APAGSGQRYG MGMPAAVAAP ARIGLNLGVR TYFSSASPEE EMGMGMGMGM GMGRVCRRRA 120 RMARCQAEGC GADLTHAKHY HRRHKVCEFH SKASIVIAAG LSQRFCQQCS RFHVLSEFDQ 180 GKRSCRKRLA DHNRRRRKSQ DLTTINTLNN NDNNNNNNNN NNNSNSTITT ATNNSNNTAL 240 LHFESSSSSN NNNNNNMNVG SSMDQCNPEI GSTVTRAPSP AMALGLGCGA IAVSSAPAGL 300 SGSSSTTVTS PPRVSFFSHL GEIRAQEHRF LSWDDGDDGS SIRSLYQSK

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MLDYEWTNPA AAAAAAMLLF GDGGEVGPTP FDQYGGSGNG LAAGDLFAPT AAGGLFSPVG  60
APAGSGQRYG MGMPAAVAAP ARIGLNLGVR TYFSSASPEE EMGMGMGMGM GMGRVCRRRA  120
RMARCQAEGC GADLTHAKHY HRRHKVCEFH SKASIVIAAG LSQRFCQQCS RFHVLSEFDQ  180
GKRSCRKRLA DHNRRRRKSQ DLTTINTLNN NDNNNNNNNN NNNSNSTITT ATNNSNNTAL  240
LHFESSSSSN NNNNNNMNVG SSMDQCNPEI GSTVTRAPSP AMALGLGCGA IAVSSAPAGL  300
SGSSSTTVTS PPRVSFFSHL GEIRAQEHRF LSWDDGDDGS SIRSLYQSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	5e-47	SBP family protein