PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020684589.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 260aa MW: 30030.8 Da PI: 8.2104

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020684589.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.5	3.8e-17	68	154	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA++ GFsvrk++++ ++++i++++fv sk +++e++ +k + +++ trtgC +++ ++dg w v+k + HnHela XP_020684589.1 68 YCHYAHSNGFSVRKEHHHFWPNTKKIKSKDFVYSKACFKKETEMG-TKVKYQKSCTRTGCPVMVRFAVSQDGIWTVNKSIESHNHELA 154 99**************************************999.9999999*******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MRAVMSRIFG GGNMIIRRRN RQVLNEMSTN VAFAFEDFDE TPTLNFDEAF SNVIKGVYNS 60 EKEAYEKYCH YAHSNGFSVR KEHHHFWPNT KKIKSKDFVY SKACFKKETE MGTKVKYQKS 120 CTRTGCPVMV RFAVSQDGIW TVNKSIESHN HELARSDDQH LLRSSRSISD ENAAVLKSMS 180 EAEIRTVDAF TYLSDEVGGV GNLVFTKRDA YNYIQKERRA KIETGDTNSL IKLFKERTIN 240 DNIFSWDVQT DEDGCLLNFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-21	FAR1 family protein