PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020684633.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 486aa MW: 54188.3 Da PI: 6.6314

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020684633.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.6	2.5e-06	276	297	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H XP_020684633.1 276 FCMICGKGFKRDANLRMHMRGH 297 5*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MNSKFKRVAE YSSSSPQIMG DTARKLSKSQ PFPLFNSSSV HYDPRTTPSF PEMSLLDSRS 60 QSLCLLSHEV KKQDQSKPIS WVKSQILDWD PKAMLNNLSF LEQKIHQVQD IVHSIANQDS 120 QFSNQENELA AHQQLVTADL TCIIIQLIST AGTLLPSMKN SLTTANTLLE PLGSITTSSS 180 ICFNDNMQQK ETVPLEMAKA SEFDELIRGL SDCGTEGDEL IKCLKNSSSE VAESALVEDH 240 DLKDADEGVD GENLPPGSYE VLQLEKEEIL APHTHFCMIC GKGFKRDANL RMHMRGHGDE 300 YKSAAALAKP TKDLNSELTP IRRYSCPFIG CKRNKDHKKF LPLKTILCVK NHYKRSHCDK 360 KYTCSRCHTK KFSVLADLKT HEKHCGRDKW LCSCGTTFSR KDKLFGHVAL FQGHTPALPT 420 DEGKAVGALD HGNENEEKAV LVKTSLDGGA NVLDVRGDDD ERGLFSLMNF DSFNYGGFDE 480 FSQPGF

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MNSKFKRVAE YSSSSPQIMG DTARKLSKSQ PFPLFNSSSV HYDPRTTPSF PEMSLLDSRS  60
QSLCLLSHEV KKQDQSKPIS WVKSQILDWD PKAMLNNLSF LEQKIHQVQD IVHSIANQDS  120
QFSNQENELA AHQQLVTADL TCIIIQLIST AGTLLPSMKN SLTTANTLLE PLGSITTSSS  180
ICFNDNMQQK ETVPLEMAKA SEFDELIRGL SDCGTEGDEL IKCLKNSSSE VAESALVEDH  240
DLKDADEGVD GENLPPGSYE VLQLEKEEIL APHTHFCMIC GKGFKRDANL RMHMRGHGDE  300
YKSAAALAKP TKDLNSELTP IRRYSCPFIG CKRNKDHKKF LPLKTILCVK NHYKRSHCDK  360
KYTCSRCHTK KFSVLADLKT HEKHCGRDKW LCSCGTTFSR KDKLFGHVAL FQGHTPALPT  420
DEGKAVGALD HGNENEEKAV LVKTSLDGGA NVLDVRGDDD ERGLFSLMNF DSFNYGGFDE  480
FSQPGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-152	C2H2 family protein