PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020684730.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 676aa MW: 73155 Da PI: 10.368

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020684730.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.4	2.8e-12	15	65	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 W t+E++ll++av+++G+++W+++a +++ +t+ +c+ r+++++ XP_020684730.2 15 WGTWEELLLACAVNRHGTRSWDSVAMEIQarspfsDLLTPQSCRQRYLDLK 65 *********************************88********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MASGTRSADL ENEIWGTWEE LLLACAVNRH GTRSWDSVAM EIQARSPFSD LLTPQSCRQR 60 YLDLKRRFES GGEGIREKVD AAGGGGDSGS SADVPWLEEL RKLRMAELRR EVEQYDVSIT 120 SLQLKLKNLR AERERSEADE GEPDLKDNEM NKDGDSPEPA PAAFARDRIS AGDSGGSCKE 180 SNSTNPKAKE VKAGGGGEVT EPEKTTKADG HDMLAGPARE ASCNGSSETL SKGSETAEPA 240 PPILGESGES VAGEKESSDV QSSVSLSRRR RRRLQKAISG SSSVAEEAET DDVSPVAANA 300 NHITAAESQP LAAFLEIIRS SKYGSVFLSR LEGQENSRYR SMIRRHVDLE IVRARLERRG 360 AKYSNAEFFR DLLLLCNNAI VFFHKTSPES TAAVHLRQMV TKEMTAMLPK PARAKMEEAS 420 KESSLPLTKM VNKLKLDSDL NNPLPKKNRS SGSLIVCRKR SFISKAAAAT EVEVAGKPER 480 ENDLDSGQKE RERERDVDKQ SSIAKPKTKE RSKVSGMRGL RTSKSRGGPA GSGSRNSKPA 540 PAQKPSLNAE EIPEAPAKVE KKPVATSSNP TPKKRNAASF LDRLRNSSTG PLLNSPKTSG 600 GGSSGKGSEQ RRVGKGEGRK DAASAHSESG QTKRSVGRPP KRTPPTPSPP PAKRVKVEAV 660 SAKRPPAPPQ KKRGRK

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MASGTRSADL ENEIWGTWEE LLLACAVNRH GTRSWDSVAM EIQARSPFSD LLTPQSCRQR  60
YLDLKRRFES GGEGIREKVD AAGGGGDSGS SADVPWLEEL RKLRMAELRR EVEQYDVSIT  120
SLQLKLKNLR AERERSEADE GEPDLKDNEM NKDGDSPEPA PAAFARDRIS AGDSGGSCKE  180
SNSTNPKAKE VKAGGGGEVT EPEKTTKADG HDMLAGPARE ASCNGSSETL SKGSETAEPA  240
PPILGESGES VAGEKESSDV QSSVSLSRRR RRRLQKAISG SSSVAEEAET DDVSPVAANA  300
NHITAAESQP LAAFLEIIRS SKYGSVFLSR LEGQENSRYR SMIRRHVDLE IVRARLERRG  360
AKYSNAEFFR DLLLLCNNAI VFFHKTSPES TAAVHLRQMV TKEMTAMLPK PARAKMEEAS  420
KESSLPLTKM VNKLKLDSDL NNPLPKKNRS SGSLIVCRKR SFISKAAAAT EVEVAGKPER  480
ENDLDSGQKE RERERDVDKQ SSIAKPKTKE RSKVSGMRGL RTSKSRGGPA GSGSRNSKPA  540
PAQKPSLNAE EIPEAPAKVE KKPVATSSNP TPKKRNAASF LDRLRNSSTG PLLNSPKTSG  600
GGSSGKGSEQ RRVGKGEGRK DAASAHSESG QTKRSVGRPP KRTPPTPSPP PAKRVKVEAV  660
SAKRPPAPPQ KKRGRK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	268	273	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	8e-69	MYB_related family protein