PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020684786.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 247aa MW: 28192.2 Da PI: 4.6576

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020684786.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.8e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl XP_020684786.1 14 KGPWTAEEDQILISYIQSHGHGNWRALPKLAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	50.4	5.2e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++ ++ ++++lG++ W++Ia++++ gRt++++k+ w+++l XP_020684786.1 67 RGNFTREEEDAIITLHQMLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MVRAPCCEKM GLKKGPWTAE EDQILISYIQ SHGHGNWRAL PKLAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF TREEEDAIIT LHQMLGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRLKTGT 120 ETTQESARKN QIESKEEKPT QSFSSTDVSC SGNTESSTSS TLENSQNSMD SSLNHEFQEI 180 DESFWTETLQ MDGNAEQNSM DSMELMEEGF SSEFSDETFL FSAGSSDEDD MSYWLRIFLQ 240 AEELPEI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	LKKRLKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	8e-79	MYB family protein