PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020684826.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NF-YC

Protein Properties

Length: 170aa MW: 19528.9 Da PI: 5.5534

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020684826.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	172.1	6e-54	40	142	1	100
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q i++++dfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt rsw haeenkrrtl+k+diaaa+trtd+fdfl XP_020684826.1 40 QLQMFWADQyreIDQTSDFKNHSLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRSWAHAEENKRRTLQKNDIAAAITRTDVFDFL 134 89***999999****************************************************************************** PP NF-YC 93 vdivprde 100 vdivpr+e XP_020684826.1 135 VDIVPREE 142 ****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence
MDQQGHGSQA PMGVGANVPY QAYPQLYHHQ QQQQQQQQQQ LQMFWADQYR EIDQTSDFKN 60 HSLPLARIKK IMKADEDVRM IAAEAPVVFA RACEMFILEL THRSWAHAEE NKRRTLQKND 120 IAAAITRTDV FDFLVDIVPR EEGNEDIGRP SVMTAPAPAG DPLAYYYIQQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	119	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.1	5e-65	NF-YC family protein