PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020684829.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

AP2

Protein Properties

Length: 733aa MW: 81463.5 Da PI: 7.3069

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020684829.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.8	4.3e-16	409	468	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_020684829.2 409 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 468 78*****************988886678446***********************98 PP
2	AP2	46.2	1.1e-14	513	562	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_020684829.2 513 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 562 9*************988532...5***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence
MTELFLFRLM DIKSRILRLI AFFFKGLAIM QKEDIKIYIG SSNWNQEREE LYLGPSPSSF 60 LEYIKLIMET HIPLFVWKQL KMKPMSGSGG SNNWLGFSLS SQMKMEVSCA EQQDHHHPNH 120 QSHHHHHHHH HECQHPTPAP PAAAASNGMP GSFFLSPSHL NNSGMCYGVE GVTGGIYSEL 180 SVMPLKSDGS LCIMEALNRS QQQGMVPSPS PKLEDFLGGG PNMGAHHQYG SNEREAMALS 240 LDSMYYHHHN QEAKGNRDQH HSLEFLQQPF RQQSSYFQPL QDGMCSALTG HDMYPEPLEE 300 EHIADHGFPS LKNWVARHYN GGINFMGGDE AAMGSGSVAA IGYGDLHSLS LSMSPGSQSS 360 CVTAPQHLSC VGGSDCMALD GSKKRIAGKG VQKQPVHRKS IDTFGQRTSQ YRGVTRHRWT 420 GRYEAHLWDN SCKKEGQTRK GRQVYLGGYD MEEKAARAYD LAALKYWGPS THINFPLENY 480 QEELEEMKNM TRQEYVAHLR RKSSGFSRGA SMYRGVTRHH QHGRWQARIG RVAGNKDLYL 540 GTFSTQEEAA EAYDIAAIKF RGANAVTNFD ITRYDVDKII ASNTLLSGEL ARKNKVAIGC 600 SNDIPLIQNS SRELDLTEDN SSSGSDWKMV LYQSPQHNVS VSESLNERPM LHGLFGMETA 660 SLTHGMDDAA KPGSMHPSNH SSLVTSLSSS REGSPDRAGL SMLYSKTPAK LIGTTWPAIP 720 MSGLPVYSGW SDA

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence

MTELFLFRLM DIKSRILRLI AFFFKGLAIM QKEDIKIYIG SSNWNQEREE LYLGPSPSSF  60
LEYIKLIMET HIPLFVWKQL KMKPMSGSGG SNNWLGFSLS SQMKMEVSCA EQQDHHHPNH  120
QSHHHHHHHH HECQHPTPAP PAAAASNGMP GSFFLSPSHL NNSGMCYGVE GVTGGIYSEL  180
SVMPLKSDGS LCIMEALNRS QQQGMVPSPS PKLEDFLGGG PNMGAHHQYG SNEREAMALS  240
LDSMYYHHHN QEAKGNRDQH HSLEFLQQPF RQQSSYFQPL QDGMCSALTG HDMYPEPLEE  300
EHIADHGFPS LKNWVARHYN GGINFMGGDE AAMGSGSVAA IGYGDLHSLS LSMSPGSQSS  360
CVTAPQHLSC VGGSDCMALD GSKKRIAGKG VQKQPVHRKS IDTFGQRTSQ YRGVTRHRWT  420
GRYEAHLWDN SCKKEGQTRK GRQVYLGGYD MEEKAARAYD LAALKYWGPS THINFPLENY  480
QEELEEMKNM TRQEYVAHLR RKSSGFSRGA SMYRGVTRHH QHGRWQARIG RVAGNKDLYL  540
GTFSTQEEAA EAYDIAAIKF RGANAVTNFD ITRYDVDKII ASNTLLSGEL ARKNKVAIGC  600
SNDIPLIQNS SRELDLTEDN SSSGSDWKMV LYQSPQHNVS VSESLNERPM LHGLFGMETA  660
SLTHGMDDAA KPGSMHPSNH SSLVTSLSSS REGSPDRAGL SMLYSKTPAK LIGTTWPAIP  720
MSGLPVYSGW SDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-128	AP2 family protein