PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020684830.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NF-YC

Protein Properties

Length: 169aa MW: 19373.8 Da PI: 5.5534

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020684830.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	170.4	2.1e-53	40	141	2	100
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 l++fw++q ie+++dfkn++lPlarikki+kadedv+mi+aeaPv++++ace+fil+lt rsw haeenkrrtl+k+diaaa+trtd+fdflv XP_020684830.1 40 LQMFWADQyreIEQTSDFKNQSLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILDLTHRSWAHAEENKRRTLQKNDIAAAITRTDVFDFLV 134 89**99999******************************************************************************** PP NF-YC 94 divprde 100 divpr+e XP_020684830.1 135 DIVPREE 141 ***97 PP

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence
MDQQGHGSQA PMGVGASVPY QAYPQLYHHQ QQQQQQQQHL QMFWADQYRE IEQTSDFKNQ 60 SLPLARIKKI MKADEDVRMI AAEAPVVFAR ACEMFILDLT HRSWAHAEEN KRRTLQKNDI 120 AAAITRTDVF DFLVDIVPRE EGNEDIGRPS VMTAPAPAGD PLAYYYIQQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.1	5e-64	NF-YC family protein