PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020684852.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family WRKY
Protein Properties Length: 158aa    MW: 18462.6 Da    PI: 9.2631
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020684852.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.43e-3380138159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk+++fprsYYrCt+++C+vkk+v+r + d+++v++tYeg H+h+
  XP_020684852.1  80 LDDGYRWRKYGQKAVKNNNFPRSYYRCTHKDCSVKKQVQRLSMDEEIVVTTYEGVHTHP 138
                     59********************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    
MENYNLLLAS NHSSSSNNSY LLQSSHADPS VLSESQEEEK KQESYDERPD KEKKKSTAKI  60
ANKIRKPRFA FQTRSKVDVL DDGYRWRKYG QKAVKNNNFP RSYYRCTHKD CSVKKQVQRL  120
SMDEEIVVTT YEGVHTHPVV KCTDNFENIL NQMQIYSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.14e-54WRKY family protein