PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020685036.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 838aa MW: 95757.5 Da PI: 8.2983

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020685036.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.5	7.9e-17	74	157	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY++YA++vGF v++++s+ + ++g++ +++C k g++++e k r+r++ t+C a+++vk++ dg +++ +l+HnH+++ XP_020685036.2 74 KFYKKYARRVGFGVSVRRSSFT-KEGHCLYLELMCCKGGRKRPEPKF-----RKRTTATTNCPARIRVKLWGDGLLHLELASLDHNHPVS 157 6**************99998.6677************9998.....999999***************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence
MEVASATPKN PRRARIARRD LNSQELSGDA TMEESGDMDG MDEGDADADS GDDSGFEGVP 60 EVGMVFKTHH EVSKFYKKYA RRVGFGVSVR RSSFTKEGHC LYLELMCCKG GRKRPEPKFR 120 KRTTATTNCP ARIRVKLWGD GLLHLELASL DHNHPVSPSM ARFLNCYKHL SGFSKKRALR 180 NDEGDVVHIE EEQSQAQAPL DKLGILEELL FSESGCRSFV ERGRLKFGEG DAEDLRLFFT 240 RMQAKNSNFF NVIDLDKEGC VRNVLWADAR SRAAYQYYND VVALDTSYVI NKYDLPLATF 300 VGVNHHGQPV LLGCALLADE TAETYIWLLK AWIACMLGHL PKAIITDQCK SIQIAVSEVL 360 PGVRHRLCLW QVMKKASEKL GGLAEYRVIH KVMQKAVYDS LRVDEFEEEW LKMIEFYGLQ 420 GNEWLRLLYE CRHCWAPVYL KDAFWAGMST TQRNESFSTF FDGYVDAKTS LKLFLSKYEM 480 ALQSKYEKEA QADFETFHKR RPSVSKFYME EQLSKVYTLN MFKKFQDEIE AIMYCHASLI 540 KIEGTISTFD VKECIFLEDG KRTMNRNHGV LYNSEEKDVQ CICGSFQFRG ILCRHALSVF 600 KLQQVHEIPS QYVLDRWKKD FKLLHVLNRS SDDVVANNRI DRYDYLSMRC LQLVEVGILS 660 DKYQLALKLI REVEKFLLSD STYEETQPKI VSRVNNKPTK PDGINTKSLG NNIPLEIGNE 720 ERRRRGRLPQ VKDSEDGVNS TVLPPANHYA AQVSPQQFIG NQTALRPSVV YMFPGGFNPQ 780 NFGNGAMMPW MYPQMYQGSQ PPGTTPEQAR KRRKVVRRLK AIQAANNPSD PPAPPSVL

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence

MEVASATPKN PRRARIARRD LNSQELSGDA TMEESGDMDG MDEGDADADS GDDSGFEGVP  60
EVGMVFKTHH EVSKFYKKYA RRVGFGVSVR RSSFTKEGHC LYLELMCCKG GRKRPEPKFR  120
KRTTATTNCP ARIRVKLWGD GLLHLELASL DHNHPVSPSM ARFLNCYKHL SGFSKKRALR  180
NDEGDVVHIE EEQSQAQAPL DKLGILEELL FSESGCRSFV ERGRLKFGEG DAEDLRLFFT  240
RMQAKNSNFF NVIDLDKEGC VRNVLWADAR SRAAYQYYND VVALDTSYVI NKYDLPLATF  300
VGVNHHGQPV LLGCALLADE TAETYIWLLK AWIACMLGHL PKAIITDQCK SIQIAVSEVL  360
PGVRHRLCLW QVMKKASEKL GGLAEYRVIH KVMQKAVYDS LRVDEFEEEW LKMIEFYGLQ  420
GNEWLRLLYE CRHCWAPVYL KDAFWAGMST TQRNESFSTF FDGYVDAKTS LKLFLSKYEM  480
ALQSKYEKEA QADFETFHKR RPSVSKFYME EQLSKVYTLN MFKKFQDEIE AIMYCHASLI  540
KIEGTISTFD VKECIFLEDG KRTMNRNHGV LYNSEEKDVQ CICGSFQFRG ILCRHALSVF  600
KLQQVHEIPS QYVLDRWKKD FKLLHVLNRS SDDVVANNRI DRYDYLSMRC LQLVEVGILS  660
DKYQLALKLI REVEKFLLSD STYEETQPKI VSRVNNKPTK PDGINTKSLG NNIPLEIGNE  720
ERRRRGRLPQ VKDSEDGVNS TVLPPANHYA AQVSPQQFIG NQTALRPSVV YMFPGGFNPQ  780
NFGNGAMMPW MYPQMYQGSQ PPGTTPEQAR KRRKVVRRLK AIQAANNPSD PPAPPSVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-132	FAR1 family protein