PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020685037.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 807aa MW: 92363.7 Da PI: 8.1386

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020685037.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.6	7.5e-17	43	126	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY++YA++vGF v++++s+ + ++g++ +++C k g++++e k r+r++ t+C a+++vk++ dg +++ +l+HnH+++ XP_020685037.2 43 KFYKKYARRVGFGVSVRRSSFT-KEGHCLYLELMCCKGGRKRPEPKF-----RKRTTATTNCPARIRVKLWGDGLLHLELASLDHNHPVS 126 6**************99998.6677************9998.....999999***************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence
MEESGDMDGM DEGDADADSG DDSGFEGVPE VGMVFKTHHE VSKFYKKYAR RVGFGVSVRR 60 SSFTKEGHCL YLELMCCKGG RKRPEPKFRK RTTATTNCPA RIRVKLWGDG LLHLELASLD 120 HNHPVSPSMA RFLNCYKHLS GFSKKRALRN DEGDVVHIEE EQSQAQAPLD KLGILEELLF 180 SESGCRSFVE RGRLKFGEGD AEDLRLFFTR MQAKNSNFFN VIDLDKEGCV RNVLWADARS 240 RAAYQYYNDV VALDTSYVIN KYDLPLATFV GVNHHGQPVL LGCALLADET AETYIWLLKA 300 WIACMLGHLP KAIITDQCKS IQIAVSEVLP GVRHRLCLWQ VMKKASEKLG GLAEYRVIHK 360 VMQKAVYDSL RVDEFEEEWL KMIEFYGLQG NEWLRLLYEC RHCWAPVYLK DAFWAGMSTT 420 QRNESFSTFF DGYVDAKTSL KLFLSKYEMA LQSKYEKEAQ ADFETFHKRR PSVSKFYMEE 480 QLSKVYTLNM FKKFQDEIEA IMYCHASLIK IEGTISTFDV KECIFLEDGK RTMNRNHGVL 540 YNSEEKDVQC ICGSFQFRGI LCRHALSVFK LQQVHEIPSQ YVLDRWKKDF KLLHVLNRSS 600 DDVVANNRID RYDYLSMRCL QLVEVGILSD KYQLALKLIR EVEKFLLSDS TYEETQPKIV 660 SRVNNKPTKP DGINTKSLGN NIPLEIGNEE RRRRGRLPQV KDSEDGVNST VLPPANHYAA 720 QVSPQQFIGN QTALRPSVVY MFPGGFNPQN FGNGAMMPWM YPQMYQGSQP PGTTPEQARK 780 RRKVVRRLKA IQAANNPSDP PAPPSVL

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence

MEESGDMDGM DEGDADADSG DDSGFEGVPE VGMVFKTHHE VSKFYKKYAR RVGFGVSVRR  60
SSFTKEGHCL YLELMCCKGG RKRPEPKFRK RTTATTNCPA RIRVKLWGDG LLHLELASLD  120
HNHPVSPSMA RFLNCYKHLS GFSKKRALRN DEGDVVHIEE EQSQAQAPLD KLGILEELLF  180
SESGCRSFVE RGRLKFGEGD AEDLRLFFTR MQAKNSNFFN VIDLDKEGCV RNVLWADARS  240
RAAYQYYNDV VALDTSYVIN KYDLPLATFV GVNHHGQPVL LGCALLADET AETYIWLLKA  300
WIACMLGHLP KAIITDQCKS IQIAVSEVLP GVRHRLCLWQ VMKKASEKLG GLAEYRVIHK  360
VMQKAVYDSL RVDEFEEEWL KMIEFYGLQG NEWLRLLYEC RHCWAPVYLK DAFWAGMSTT  420
QRNESFSTFF DGYVDAKTSL KLFLSKYEMA LQSKYEKEAQ ADFETFHKRR PSVSKFYMEE  480
QLSKVYTLNM FKKFQDEIEA IMYCHASLIK IEGTISTFDV KECIFLEDGK RTMNRNHGVL  540
YNSEEKDVQC ICGSFQFRGI LCRHALSVFK LQQVHEIPSQ YVLDRWKKDF KLLHVLNRSS  600
DDVVANNRID RYDYLSMRCL QLVEVGILSD KYQLALKLIR EVEKFLLSDS TYEETQPKIV  660
SRVNNKPTKP DGINTKSLGN NIPLEIGNEE RRRRGRLPQV KDSEDGVNST VLPPANHYAA  720
QVSPQQFIGN QTALRPSVVY MFPGGFNPQN FGNGAMMPWM YPQMYQGSQP PGTTPEQARK  780
RRKVVRRLKA IQAANNPSDP PAPPSVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-132	FAR1 family protein