PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020685087.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WOX

Protein Properties

Length: 259aa MW: 29924.5 Da PI: 5.0297

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020685087.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.6	2.9e-20	98	158	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +p++++++e + +l +++e++V++WFqNrRa+ k+ XP_020685087.1 98 RQRWTPTPMQLQILENIFDQgNGTPTKQKIKEVTLELtkhgQISETNVYNWFQNRRARSKR 158 89***************99************************************97 PP
2	Wus_type_Homeobox	100.1	1.7e-32	97	160	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPtp Q++iLe+++++G tP+k++i+++t eL+++G+i+++NV++WFQNr+aR+++kq XP_020685087.1 97 SRQRWTPTPMQLQILENIFDQGNGTPTKQKIKEVTLELTKHGQISETNVYNWFQNRRARSKRKQ 160 689***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence
MEWVKVAASL NDGEERRREE EEERGEEMGE GVLYVKVMTD EQMEILRRQI AVYATICEQL 60 VEMHKAVSAQ QDSLAGMRFG SMYCDPMLTS SSHKIASRQR WTPTPMQLQI LENIFDQGNG 120 TPTKQKIKEV TLELTKHGQI SETNVYNWFQ NRRARSKRKQ SSTAPSNTES EAEIEIESRN 180 DKKAKAETII SEEMTNPSFH YKEMNSEVHS LNPGTNRLRD YSSFFEASLS NPRTDNLAGK 240 MYYTGIEHMM EKMDDSWEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	160	RRARSKRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-72	WOX family protein