PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020685110.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 249aa    MW: 27553.9 Da    PI: 7.3862
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020685110.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.98.2e-161152344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    i+n+  r  t+ kRr g+lKK +ELS+LC++ ++ +++s++ 
  XP_020685110.1 11 ISNDATRRATLKKRRRGLLKKVNELSILCGVSACAVVYSPQT 52
                    9**************************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MARKKVTLAY ISNDATRRAT LKKRRRGLLK KVNELSILCG VSACAVVYSP QTEQPEVFPS  60
VEEAKKILTD LSNMPEIDKN KKMVNQRSFL EQRLVKLSQQ VRRLEHENKE LSTAVCLRQC  120
LAGRSVHSLS KEEADDMLDL VDRKLKALQV RMHQLGPLML PPIMMEEIDV KVGGIGYEGV  180
EIEGMREYEW IAGNGGVGIG RGEEVMGGGG GSGVVGGEGA ELMEVLIERL SGSRSAWEES  240
LLPLPSPYY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVTLAYISNDATRRATLKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-31M-type_MADS family protein