PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020685195.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NF-YC

Protein Properties

Length: 245aa MW: 27450.8 Da PI: 4.8916

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020685195.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56.2	7.4e-18	7	86	19	98
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P rikki++aded+ +i+ +P l+ska elf+ +l r++ + + +tl+ ++++v+ fdfl+d+v + XP_020685195.1 7 TRFPAPRIKKIMQADEDIGKIALAVPLLVSKALELFLQDLCDRTYEVTLQRGAKTLNSLHLKQCVKMYGAFDFLTDVVNK 86 579**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MRKKLGTRFP APRIKKIMQA DEDIGKIALA VPLLVSKALE LFLQDLCDRT YEVTLQRGAK 60 TLNSLHLKQC VKMYGAFDFL TDVVNKVPNL GGTESFGDEK GICRRRKTIE HDGDTTTDES 120 RFAKVAMTST NISPRGRGRG RGRSRGRPPL NRNLERESSL MKYEDEIDLS PEHEDPITDS 180 DATEKAKDNI TDFTNPASIL STEANPGEYS AWPLPDEVVK LGIEPSNLAN INLHLDEDED 240 YDNED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	145	RGRGRGRGRSR
2	137	147	RGRGRGRGRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	3e-52	NF-YC family protein