PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020685197.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NF-YC

Protein Properties

Length: 228aa MW: 25428.2 Da PI: 4.4313

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020685197.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	38.4	2.7e-12	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++aded+ +i+ +P l+ska elf+ +l r++ + + +tl+ ++++v+ fdfl+d+v + XP_020685197.1 1 MQADEDIGKIALAVPLLVSKALELFLQDLCDRTYEVTLQRGAKTLNSLHLKQCVKMYGAFDFLTDVVNK 69 899***************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MQADEDIGKI ALAVPLLVSK ALELFLQDLC DRTYEVTLQR GAKTLNSLHL KQCVKMYGAF 60 DFLTDVVNKV PNLGGTESFG DEKGICRRRK TIEHDGDTTT DESRFAKVAM TSTNISPRGR 120 GRGRGRSRGR PPLNRNLERE SSLMKYEDEI DLSPEHEDPI TDSDATEKAK DNITDFTNPA 180 SILSTEANPG EYSAWPLPDE VVKLGIEPSN LANINLHLDE DEDYDNED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	128	RGRGRGRGRSR
2	120	130	RGRGRGRGRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	4e-41	NF-YC family protein